Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1242g00003 ATGCTGAAACTAATAGGTCCAATTACAATGGAAAAGAAGGAGTATAACGGGAGCATTCCTAGTCTGGTCTTGAGGCCACAATCATGGACAAAGCTATGCAACATTATGTTTGCAAATTTGCCATTTGGAACAGGTTTCTCATATGCAAAAAATACTTCTTCTCATCGAAGCGATCGAAAGTTTGTTCACCATGTTCATCAATTTATTAGAAAGTGGTTGATTGATCATCCTGAATTTCTTTCAAATGAATTCTACGTTGGAGGAGATTCATATGCTGGGATTCCTATCCCTGCTATTGTTCAAGAAATTTCAAATGGAAATGGGAAAGCTCTCCAACCATTGATAAATCTCAAGGGATATCTACTAGGGAACCCTGTAACAACACGTAAAGAAAAAAATGATCGAATCTCATATGCTCATGGAATGGGGCTCATTTCCAATGAACTATATGAGTCCTTACAACAAAATTGTAAAGGAGAGTATATTGATGTAAATTCCAAAAATGTGTTATGTTTAAGAGATCTCCAATATTTTGATAAGTGTATTTCAGGAATTAAACGATCGCATATTTTAGATTACTATTGTGAAGATGAGCCGCATGTATGGAGGAGATCTTTAACTCAAGAGTTTAAAGAATCTCTTAGTTATCATCTCACACCGCCCGTGCCTGACTTACGTTGCCAACTTTATAAATTTTATCTCAACGAAATATGGGCTAATGAAGAGCGTGTTCGCAAAGCACTGCATATTCGGGAGGGTACTATAGAAAAATGGATACGTTGTTATCGGAATGATTTTGTGTTTGATATCACAAACAGTGTTGAATTTCATGTAAATCTAAGTAAAAAAGGATTCCGCTCTTTGATATATAGTGGAGATCATGATTTAGTTGTTCCTTTCTTATCTACACAATCATGGATAAAAGGTCTAAACTACTCTATTGTGGATGATTGGAGGTCATGGCTAATTAAAGATCAAGTAGCAGGATATACGAGGACTTATTCTAATCAAATGACATTTGCAACTCTAAAGGGGTCAGGACATACAGGTCCTGAATACACTCCTTGGGCAGGTTTTGTCATGTTTTCTAAATGGATATCTAATACACCTTTATAA 1116 0.3575 MLKLIGPITMEKKEYNGSIPSLVLRPQSWTKLCNIMFANLPFGTGFSYAKNTSSHRSDRKFVHHVHQFIRKWLIDHPEFLSNEFYVGGDSYAGIPIPAIVQEISNGNGKALQPLINLKGYLLGNPVTTRKEKNDRISYAHGMGLISNELYESLQQNCKGEYIDVNSKNVLCLRDLQYFDKCISGIKRSHILDYYCEDEPHVWRRSLTQEFKESLSYHLTPPVPDLRCQLYKFYLNEIWANEERVRKALHIREGTIEKWIRCYRNDFVFDITNSVEFHVNLSKKGFRSLIYSGDHDLVVPFLSTQSWIKGLNYSIVDDWRSWLIKDQVAGYTRTYSNQMTFATLKGSGHTGPEYTPWAGFVMFSKWISNTPL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1242g00003 371 Gene3D alpha/beta hydrolase 1 371 IPR029058 -
Vivi1242g00003 371 Pfam Serine carboxypeptidase 5 368 IPR001563 GO:0004185|GO:0006508
Vivi1242g00003 371 PRINTS Carboxypeptidase C serine protease (S10) family signature 38 48 IPR001563 GO:0004185|GO:0006508
Vivi1242g00003 371 PRINTS Carboxypeptidase C serine protease (S10) family signature 72 97 IPR001563 GO:0004185|GO:0006508
Vivi1242g00003 371 PRINTS Carboxypeptidase C serine protease (S10) family signature 25 37 IPR001563 GO:0004185|GO:0006508
Vivi1242g00003 371 PRINTS Carboxypeptidase C serine protease (S10) family signature 338 351 IPR001563 GO:0004185|GO:0006508
Vivi1242g00003 371 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 5 355 IPR001563 GO:0004185|GO:0006508
Vivi1242g00003 371 FunFam Carboxypeptidase 226 370 - -
Vivi1242g00003 371 SUPERFAMILY alpha/beta-Hydrolases 4 370 IPR029058 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1242g00003 238 371 Calmodulin-binding Proteins AT2G22960 60.000 2.80e-55 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1242g00003 K16296 - tpra:123922058 581.252