Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1240g00012 ATGTTGGTCACCGATTTCGTACGACTTTGCTTTAAAGATGAGGGTTCTGCAGTTCAGTGCAGTAATCAAAATGGTGTGAGTAATGGTGACTCTGCATCTGTTCCGTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCTGATTACGTACCATACATCACTCCGATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGATAACTTCAGAATGAATACTTACTCTGACAGAGATCAGCAAAATAAGGAAATATGTTGCTCTGATTATCGTTTTGTTTACATGGGAGTTAAAGGATCTTGGACTCCTCTACACGCTGATGTTTTCAGATCGTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTCCTAGATCCTTCCCAGTGTCATCTTGTGTTTGACAGGAATGTGAAAAACTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATATCCTAGTTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCACCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACTTTCATTTCATACTTCACCTTGGCCAACTTGGTGTTGCTTTGCTACATAAATAGAAGAGATGGAAGTACAGCTGGGAACTCATCAAGAGTAGCTCAGCATGCATCCATGAATATTGGGTCTATTAGGAAGATTGCATCAGAGATGAAACACAGTGGTGGTCTAGAAGGGAATCATGATTGCGTAGTGGATATGATAAAAACATTTGAAGATCCTAGGTTTTCCAAATTCTGCATGCAGGTGGGAAAAACATATTTAATGATACACGGGCAATCGGATTTGTTCTCTGATTTTGTGGGTGCTTCCATGGTTGATTTGGTGGATCTCGGTATTTTGAAAGCACGCACTTCTTCTAAGGTTTATGCACCTGAAGACCTCATCAAGTTTATAGACAACGCCTTTGCAAAACAGGGTGACTCTTACATCGAGTCATCTGTACAGCGTGTTGCTTGA 1209 0.3937 MLVTDFVRLCFKDEGSAVQCSNQNGVSNGDSASVPYLKDWHFVKEYPDYVPYITPMFFCDDWLNLYLDNFRMNTYSDRDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLVFDRNVKNCVYNIFDEVSDSKYPSFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFISYFTLANLVLLCYINRRDGSTAGNSSRVAQHASMNIGSIRKIASEMKHSGGLEGNHDCVVDMIKTFEDPRFSKFCMQVGKTYLMIHGQSDLFSDFVGASMVDLVDLGILKARTSSKVYAPEDLIKFIDNAFAKQGDSYIESSVQRVA 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1240g00012 402 Gene3D Cupin 1 200 - -
Vivi1240g00012 402 ProSiteProfiles JmjC domain profile. 60 215 IPR003347 -
Vivi1240g00012 402 SMART cupin_9 35 215 IPR003347 -
Vivi1240g00012 402 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 31 270 - -
Vivi1240g00012 402 Pfam JmjC domain, hydroxylase 93 198 IPR003347 -
Vivi1240g00012 402 SUPERFAMILY Clavaminate synthase-like 17 227 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1240g00012 52 207 Glycosyltransferase AT1G78280 26.994 9.72e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi1240g00012 JmjC 2e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1240g00012 - - gmx:100803814 658.292