Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1240g00011 ATGGATATCAAAATCAAAATAAAGGGAGAAATAGAAAAGGTGAATGGGAAAGAACTAAGTTATAATGATTTTGTTGAAAGATATATGGAGAAAAACAAGCCAGTGGTGCTAACTGGATTAATGGACGATCATTGGAAGGCTTGCACTGATTGGGTTAGCCCTAATGGAAAACCTAATCTCCAATTTTTCTCAACTCATTTTGGTTCCTCCAAAGTTCAGGTTGCAGACTGTGATACTAGAGATTTTACTGATCAAAAAAGGGAGGAGATGTTGGTCACCGATTTCGTACGACTTTGCTTTAAAGATGAGGGTTCTGCAGTTCAGTGCAGTAATCAAAATGGTGTGAGTAATGGTGACTCTGCATCTGTTCCGTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCTGATTACGTACCATACATCACTCCGATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGATAACTTCAGAATGAATACTTACTCTGACAGAGATCAGCAAAATAAGGAAATATGTTGCTCTGATTATCGTTTTGTTTACATGGGAGTTAAAGGATCTTGGACTCCTCTACACGCTGATGTTTTCAGATCGTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTCCTAGATCCTTCCCAGTGTCATCTTGTGTTTGACAGGAATGTGAAAAACTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATATCCTAGTTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCACCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACTTTCATTTCATACTTCACCTTGGCCAACTTGGTGTTGCTTTGCTACATAAATAGAAGAGATGGAAGTACAGCTGGGAACTCATCAAGAGTAGCTCAGCATGCATCCATGAATATTGGGTCTATTAGGAAGATTGCATCAGAGATGAAACACAGTGGTGGTCTAGAAGGGAATCATGATTGCGTAGTGGATATGATAAAAACATTTGAAGATCCTAGGTTTTCCAAATTCTGCATGCAGGTGGGAAAAACATATTTAATGATACACGGGCAATCGGATTTGTTCTCTGATTTTGTGGGTGCTTCCATGGTTGATTTGGTGGATCTCGGTATTTTGAAAGCACGCACTTCTTCTAAGGTTTATGCACCTGAAGACCTCATCAAGTTTATAGACAACGCCTTTGCAAAACAGGGTGACTCTTACATCGAGTCATCTGTACAGCGTGTTGCTTGA 1476 0.3882 MDIKIKIKGEIEKVNGKELSYNDFVERYMEKNKPVVLTGLMDDHWKACTDWVSPNGKPNLQFFSTHFGSSKVQVADCDTRDFTDQKREEMLVTDFVRLCFKDEGSAVQCSNQNGVSNGDSASVPYLKDWHFVKEYPDYVPYITPMFFCDDWLNLYLDNFRMNTYSDRDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLVFDRNVKNCVYNIFDEVSDSKYPSFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFYDFFTFISYFTLANLVLLCYINRRDGSTAGNSSRVAQHASMNIGSIRKIASEMKHSGGLEGNHDCVVDMIKTFEDPRFSKFCMQVGKTYLMIHGQSDLFSDFVGASMVDLVDLGILKARTSSKVYAPEDLIKFIDNAFAKQGDSYIESSVQRVA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1240g00011 491 ProSiteProfiles JmjC domain profile. 149 304 IPR003347 -
Vivi1240g00011 491 SUPERFAMILY Clavaminate synthase-like 9 316 - -
Vivi1240g00011 491 SMART cupin_9 124 304 IPR003347 -
Vivi1240g00011 491 Pfam Cupin-like domain 23 287 IPR041667 -
Vivi1240g00011 491 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 9 359 - -
Vivi1240g00011 491 Gene3D Cupin 3 288 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1240g00011 9 296 Glycosyltransferase AT1G78280 24.415 7.93e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi1240g00011 Cupin_8 6e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1240g00011 - - gmx:100803814 796.193