Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi123g00077 ATGTCTTCCACCCTCACAATGCAACGTTTCAAAATGGGTTTCTCTGATTACATCCAAGCATTAGAACAGGAACGTCGTAAGATTCAGGTCTTTCCCAAGGAACTTCCCCTTTCCCTAGAACTCGTTACACAAGCTATTGAAACTTGTAGACAGCAATTGTCTGGAACAACAACTGAGTATAATTTGAATGGACAATCTGAGTGTTCTGAACAGACAACATCAACAGGACCTGTTTTGGAAGAGTTTATTCCGATTAAGAAAAGGGCTTCTCCTTATTGTGAACAAGTCTATGATGATGATGATGGTGATGAAGAAGATGAGCAACATTCTCATCATAAGCAGCAAAAAATTTCAATGGATGATGATAATAAGAATTCTGACAAGAAGAAATCTGATTGGCTTAGATCTGTTCAGTTATGGAATTCAGATCCTCCATCTGAGGAGGATGCTACTAGGAAAGTGTCTGTGGTAGAATTGAAGAGAAATGGAAGTGCTGGTGGTGCTTTTCACCCGTTCCAGAAAGACGAAAGAGTTAACAACAAGACATGTGAGTTTTTGAGTAAAGGACAACCCTCTTCGACCGGTGTAGCTGCTGCGAGTTCTAACGCAGCCACGACTGTCACTAGTAACAATGCTGGAAACGACAAAAGAGAGGATAAAGAGGAAAAGAGAAAGCAGCGAAGATGCTGGTCACAGGAGTTGCACAAACGATTCTTGCAAGCACTTCAACAACTCGGAGGTGCAGATTCTGCCACGCCGAAGCAAATCAGAGAGCTAATGAACGTTGACGGTCTCACAAACGATGAAGTCAAAAGCCATTTACAGAAATACCGTTTGCATACAAGAAGACCGAGTTCATCGAATAACGAAAGTGCCAAATCACAAACAGCAACACCTTTTGTGCTTGTAGGAAACATTTTTGTCCAACCAACAGAATACGGCGGGGTAGGTTCATCAACAACATCAGGGGAAATGACAAAGGTAGTTGCACCTTCTGGAATTTACGCACCAGTGGCCTCACATCCTCCGGTTGCTACAATTAAGAAGCCCGAGTTTAAGAAGTTCGAGAAATCAATCTCAGAAGAAAGGGGTAATAATAATAATAATAATAATAATAACAACAACAACAGTGAAGGCGCTGTTCATTCGAATTCACCTGCTTCATCATCCTCTACACATACTACTACTAATACTTCCCATGGCTTTTGA 1209 0.4136 MSSTLTMQRFKMGFSDYIQALEQERRKIQVFPKELPLSLELVTQAIETCRQQLSGTTTEYNLNGQSECSEQTTSTGPVLEEFIPIKKRASPYCEQVYDDDDGDEEDEQHSHHKQQKISMDDDNKNSDKKKSDWLRSVQLWNSDPPSEEDATRKVSVVELKRNGSAGGAFHPFQKDERVNNKTCEFLSKGQPSSTGVAAASSNAATTVTSNNAGNDKREDKEEKRKQRRCWSQELHKRFLQALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSSSNNESAKSQTATPFVLVGNIFVQPTEYGGVGSSTTSGEMTKVVAPSGIYAPVASHPPVATIKKPEFKKFEKSISEERGNNNNNNNNNNNNSEGAVHSNSPASSSSTHTTTNTSHGF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi123g00077 402 MobiDBLite consensus disorder prediction 106 130 - -
Vivi123g00077 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 222 282 IPR017930 -
Vivi123g00077 402 Gene3D - 224 282 - -
Vivi123g00077 402 MobiDBLite consensus disorder prediction 362 402 - -
Vivi123g00077 402 MobiDBLite consensus disorder prediction 95 130 - -
Vivi123g00077 402 MobiDBLite consensus disorder prediction 213 229 - -
Vivi123g00077 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 364 IPR044787 GO:0003700|GO:0006355
Vivi123g00077 402 NCBIfam myb-like DNA-binding domain, SHAQKYF class 225 280 IPR006447 GO:0003677
Vivi123g00077 402 MobiDBLite consensus disorder prediction 358 402 - -
Vivi123g00077 402 MobiDBLite consensus disorder prediction 188 229 - -
Vivi123g00077 402 FunFam Myb family transcription factor 224 282 - -
Vivi123g00077 402 Pfam Myb-like DNA-binding domain 227 278 IPR001005 -
Vivi123g00077 402 MobiDBLite consensus disorder prediction 188 212 - -
Vivi123g00077 402 SUPERFAMILY Homeodomain-like 223 283 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi123g00077 16 389 G2-like Transcription Factor Family AT1G68670 44.472 1.84e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi123g00077 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi123g00077 - - aprc:113872943 456.062