Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi123g00065 ATGTCATATACAAACATGGAACTTCTGTCTCTCTCCTTCACATTCACCAAATCTCAAACCTTTCCCTCTCTCAAACAACCAATTCACCATCTTCCATTAACCACAACACTACCCAACAAAACCATTCTTTCATCATCTTCTTCTTTTTCCATTTCATGTAATTCCTCTTTTACCAGAATCTCAGCAACGAATACCCAACCATCCATTTCACAAACCGATATGTTGTTCCCTGCGGGAAATTCAAAGCATTGGATTGTTAGAATGGATAAGCCTGCTGTTGGTGTTGTTACCAAAGCTCAAATTGTTGATCATTATGCTCAAATTTTGACCAAGGTTATGGGAAATGAAAAAGATGCACAGATGTGTTTATATCATGTTTCTTGGAAAACCAACTTTGGGTTTTGTTGTGAAATTGATGAGGACTCTGCACATGAGTTAGCTGGTGTGCCTGGTGTATTGTCAGTTCAGCCAGACCTCAATTTTGAGTCTGAAAATAAGAATTATGAAGGTAGAAACTTGGAAAATAGACTGAATGTGCCTAGTTCTTTGGAAGAAACTCAGGAAACTTCAGTGAAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCTGCATTTGAAAGCTTTGGCGAGCTTGTTGAAGTTAAAGTTATCATAGATAAAATTTCAAAAAGGTCAAAGGGTTATGCATTTATTGAATATGCCACAGAAGAGGCTGCAAGTGAAGCGCTCAAAGAGATGAATGGCAAGATTATTAACGGCTGGATGATAGTGGTAGATGCTGCCAAGACTACCCCGCCAAGATACAACAAAGGTCGTGCCAGACCATCCGCTTGA 861 0.3879 MSYTNMELLSLSFTFTKSQTFPSLKQPIHHLPLTTTLPNKTILSSSSSFSISCNSSFTRISATNTQPSISQTDMLFPAGNSKHWIVRMDKPAVGVVTKAQIVDHYAQILTKVMGNEKDAQMCLYHVSWKTNFGFCCEIDEDSAHELAGVPGVLSVQPDLNFESENKNYEGRNLENRLNVPSSLEETQETSVKTKKLFVTGLSFYTSEKTLRAAFESFGELVEVKVIIDKISKRSKGYAFIEYATEEAASEALKEMNGKIINGWMIVVDAAKTTPPRYNKGRARPSA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi123g00065 286 SUPERFAMILY RNA-binding domain, RBD 186 283 IPR035979 GO:0003676
Vivi123g00065 286 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 71 162 IPR037045 -
Vivi123g00065 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Vivi123g00065 286 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 16 263 IPR039206 GO:0016554
Vivi123g00065 286 Gene3D - 163 286 IPR012677 -
Vivi123g00065 286 SMART rrm1_1 195 268 IPR000504 GO:0003723
Vivi123g00065 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 262 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi123g00065 181 279 C2H2 Transcription Factor Family AT2G19380 33.333 2.91e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi123g00065 - - vvo:131613880 548.51