Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi123g00038 ATGATTTCGACTGTGATTAACTTGGTAATGACGATGGTTGGTTTTGCTGTTAGCACAATGTTCATTGTTTTTGTTTGCACTAGGCTCATTTGTGCTAGGATTCACTTGAATGCTTCTAGGAGATCCTTTCTCATTGCTTCTAGATCCAATCTCAGCTTGATGGAGAGGGGTTGTCAAGGTCTTGAACGCGTAGATGTAGCTAAATTTCCAGTTAAGAAGTACAGTGACAAGTTTTTTGCAGCGGGTGAAAATTCTCAATGCACAGTCTGTCTCTCAGAGTACCAAGGTGAAGATACACTGCGTATCCTTCCCCCTTGTGGACACTCCTTCCATATGGCCTGCATAGACTTATGGCTGCAGCAGAACGCAACTTGTCCTGTTTGTCGAATATCACTGCGCGAATTTTCCGAGAGAACGCAGTCAATGCAACCTGTAAATAGCTCTCATCATGGAACGGAGTCCTTTGACACTCATCATTATCATTGTAGAATGGCTAACAATGGATTATTGACAAGAACCACAGATAACCACGGAGTGAATCATATTCAAGAGGATCACTTTCCATCTGAGGGCGATGGAGCAGTTGATACGGAGAGTATCACCTCCTTACGTCAGGGTGATTTCATTAAAGATGAAGAGAAGAAACATGTAGAGAGCCCATCAAATTTATAG 672 0.4256 MISTVINLVMTMVGFAVSTMFIVFVCTRLICARIHLNASRRSFLIASRSNLSLMERGCQGLERVDVAKFPVKKYSDKFFAAGENSQCTVCLSEYQGEDTLRILPPCGHSFHMACIDLWLQQNATCPVCRISLREFSERTQSMQPVNSSHHGTESFDTHHYHCRMANNGLLTRTTDNHGVNHIQEDHFPSEGDGAVDTESITSLRQGDFIKDEEKKHVESPSNL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi123g00038 223 MobiDBLite consensus disorder prediction 205 223 - -
Vivi123g00038 223 CDD RING-H2_EL5-like 86 129 - -
Vivi123g00038 223 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Vivi123g00038 223 Pfam Ring finger domain 86 129 IPR001841 -
Vivi123g00038 223 PANTHER OS11G0150450 PROTEIN 1 183 - -
Vivi123g00038 223 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
Vivi123g00038 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 134 IPR013083 -
Vivi123g00038 223 SUPERFAMILY RING/U-box 81 135 - -
Vivi123g00038 223 SMART ring_2 87 128 IPR001841 -
Vivi123g00038 223 MobiDBLite consensus disorder prediction 180 223 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi123g00038 13 132 C3H Transcription Factor Family AT4G10150 36.290 2.86e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi123g00038 - - gmx:100794979 363.999