Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1236g00004 ATGGCTTCCGACGGTTTCACCGACAAGAACGCCGTGTTCAGAAAACTCAAAACCAAATCCGAAAACAAGTCGTGTTTCGATTGTAATGCGAAGAATCCAACCTGGGCGTCAGTACCGTATGGGATCTTTCTCTGCATTGATTGCTCGGCAGTTCATCGGAGTCTTGGCGTTCACATCAGCTTCGTGAGATCTACAAACTTAGACTCATGGACTCCTGAGCAACTTAAAATGATGAGCTTTGGTGGAAACGGTAGAGCAAGTGTTTTCTTTAGACAGCATGGTTGGAATGGCGATGGTAAAGTAGAGGCGAAGTATACATCCAGAGCTGCAGAGTTGTATAAGCAATTGCTTTCAAAAGAAGTTGCTAAAAGTATGGCTGAGGAGGCTGCCTTGTCTCCATCCCCTGCAACTGCTTCTCAGTCTGCCGAAGGGGATAATGGACTTCCTGATGTTAGGACAACCGAAGTCCCAATTGAAAAGACTTTGGAGAAACCAGAAAAGACTGAGAGCACTTCTTCACCTAGAGCTTCATATACTGCAGTTTCAAATAATTTGAAGAAGCCTCTTGGAGCAAAAAAAACTACTAAGAGTGGGGGGCTTGGAGCCCGTAAGCTCACTAGAAAGCCAAGTGAGTCTCTATATGAGCAGAAGCCCGAAGAAGCACCTGTGCCAGTTTCATCATCGACAAAGAACAACTTGCCTTCTGGGCCACCTCCAACATCTCGGTTTGAGTATACAGAAGATGTCCAAACATCTGAGTTAAATTCTGGAGGTCATGTGTCTGCACCAAAGTCATCTAACTTCTTTTCAGACTTTGGAATGGGTAGTGGCTTACCAAAGAAATCTGGGCCTAGCTCCTCAAAAGTGCAAATTCAGGAAACTGATGAAGCAAGAAAGAAGTTCTCAAATGCCAAGTCTATTTCTTCATCCCAATATTTTGGTGACCAGAGCAAGGCTGATGTGGATGCTCAAGCTACTTTATCAAAGTTTTCAGGTTCATCTGCTATATCCAGTGCCGATCTTTTTGGTGACTCAAGCGATAACAATGTCGATCTTGCTGCTAGTGATCTTATCAATCGAATATCTTTCCAGGCACAACAGGATATTTCTTCCCTTAAGAACATTGCTGGAGAAACTGGGAAAAAGCTCACCTCCTTGGCATCCTCCTTGATGACAGATCTTCAGGACCGAATCCTCTAA 1200 0.4417 MASDGFTDKNAVFRKLKTKSENKSCFDCNAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNGRASVFFRQHGWNGDGKVEAKYTSRAAELYKQLLSKEVAKSMAEEAALSPSPATASQSAEGDNGLPDVRTTEVPIEKTLEKPEKTESTSSPRASYTAVSNNLKKPLGAKKTTKSGGLGARKLTRKPSESLYEQKPEEAPVPVSSSTKNNLPSGPPPTSRFEYTEDVQTSELNSGGHVSAPKSSNFFSDFGMGSGLPKKSGPSSSKVQIQETDEARKKFSNAKSISSSQYFGDQSKADVDAQATLSKFSGSSAISSADLFGDSSDNNVDLAASDLINRISFQAQQDISSLKNIAGETGKKLTSLASSLMTDLQDRIL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1236g00004 399 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Vivi1236g00004 399 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vivi1236g00004 399 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vivi1236g00004 399 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vivi1236g00004 399 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Vivi1236g00004 399 MobiDBLite consensus disorder prediction 133 147 - -
Vivi1236g00004 399 MobiDBLite consensus disorder prediction 128 262 - -
Vivi1236g00004 399 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Vivi1236g00004 399 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Vivi1236g00004 399 CDD ArfGap_ArfGap2_3_like 8 123 - -
Vivi1236g00004 399 MobiDBLite consensus disorder prediction 156 170 - -
Vivi1236g00004 399 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 399 - -
Vivi1236g00004 399 MobiDBLite consensus disorder prediction 171 190 - -
Vivi1236g00004 399 Gene3D Arf GTPase activating protein 2 139 IPR038508 -
Vivi1236g00004 399 MobiDBLite consensus disorder prediction 222 262 - -
Vivi1236g00004 399 Pfam Putative GTPase activating protein for Arf 12 113 IPR001164 GO:0005096
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1236g00004 13 90 C2H2 Transcription Factor Family AT4G21160 46.835 1.13e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1236g00004 K12493 K11855 gmx:100785169 634.795