Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1233g00007 ATGGGAAATTGTTGCTCCCAAGGCGGAGATACCCCGGCCGAAAACATGGCCGCCGCGGACAAGGGAGAAACCAACCAACAAAACACCAACAATAATAAGAGTAATGATAACGAGCCATCCACTAACCCTATCACTACGCCACCCCCAACCTCCAAACCACCGGCCGCCAACACACCACCTCCATCAAAACCCTCCAAACCGGCCGCTATGGGGCCCGTTCTACAACGACCAATGGAAGACGTGAGAGCTACATACACCATAGGGAAAGAGCTAGGGAGAGGACAATTTGGGGTAACACATTTGTGTACAAATAAGGTCACAAAAGAACAATTTGCATGCAAAACAATTGCCAAGAGAAAACTTGTGAATAAAGAGGATATAGAAGATGTTAGAAGGGAGGTGCAAATAATGCATCATCTAACAGGTCAACCAAACATTGTGGAACTAAAAGGTGCATATGAAGACAAACAATCTGTTCATTTGGTTATGGAATTATGCGCCGGTGGTGAACTATTTGATCGAATCATCGCAAAAGGACTTTATACGGAACGTGCTGCAGCTTCCTTGTTGAGAACCATTGTGCAAATTATCCATACTTTGCATTCAATGGGTGTCATTCATAGAGATCTTAAACCTGAAAATTTCCTCTTGTTGAGTAAGGATGAAAATGCACCTCTTAAGGCCACCGATTTTGGTCTCTCCGTTTTTTTCAAACAAGGAGACATGTTCAAAGATATTGTTGGGAGTGCATATTACATAGCACCAGAGGTGCTGAAGAGGAGATATGGACCAGAAGTTGACATATGGAGTATTGGCGTCATGCTATACATTCTTCTTAGTGGAGTCCCTCCTTTTTGGGCAGAATCTGAACATGGAATATTCAATGCCATATTAAGAGGACACATTGACTTTCAAAGCGATCCATGGCCTACAATTTCACCTGCAGCAAAAGATCTTGTAAGGAAAATGTTGAATTCAGATCCCAAACAAAGACTTACAGCACAAGAAGTTTTGGATCATCCTTGGACCAAGGAGGATGGAGAAGCACCAGATAAACCTATTGATAATGCTGTATTGGGCAGGCTCAAGCAGTTCAGAGCAATGAACCAATTTAAGAAAGTTGCTCTAAGGGTTATTGCTGGATGTTTATCAGAAGAAGAAATTATGGGGTTGAAAGAAATGTTCAAGGGAATGGACACTGACAACAGTGGAACCATTACAATTGAAGAACTCAAACTAGGCCTTCAACAGCAAGGAACTAAGCTTTCAGAACAAGAAGTTCAACAATTAATGGAAGCTGCTGATGCTGATGGTAATGGAACGATAGATTACGACGAGTTCATCACAGCAACAATGCATATGAATAGAATGAATAGAGAAGAACATCTTTACACTGCATTCCAATATTTTGATAAAGATAACAGCGGGTTCATTACCACTGAAGAACTAGATCAAGCACTCCGTGAATACAACATGCATGATGGAAGAGACATCAAGGATATTCTTCAAGAAGTTGATGGAGACAATGATGGACGTATAAACTATGATGAGTTTGCGGCAATGATGAGAAAAGGAAACCCAGAAGCTCATACTAAGAAGAGGCGTGATTCATTTGTTTCTGTTACACAATAG 1632 0.4136 MGNCCSQGGDTPAENMAAADKGETNQQNTNNNKSNDNEPSTNPITTPPPTSKPPAANTPPPSKPSKPAAMGPVLQRPMEDVRATYTIGKELGRGQFGVTHLCTNKVTKEQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGLYTERAAASLLRTIVQIIHTLHSMGVIHRDLKPENFLLLSKDENAPLKATDFGLSVFFKQGDMFKDIVGSAYYIAPEVLKRRYGPEVDIWSIGVMLYILLSGVPPFWAESEHGIFNAILRGHIDFQSDPWPTISPAAKDLVRKMLNSDPKQRLTAQEVLDHPWTKEDGEAPDKPIDNAVLGRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKLGLQQQGTKLSEQEVQQLMEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITTEELDQALREYNMHDGRDIKDILQEVDGDNDGRINYDEFAAMMRKGNPEAHTKKRRDSFVSVTQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1233g00007 543 Gene3D Transferase(Phosphotransferase) domain 1 171 350 - -
Vivi1233g00007 543 ProSiteProfiles Protein kinase domain profile. 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1233g00007 543 CDD STKc_CAMK 85 342 - -
Vivi1233g00007 543 SUPERFAMILY EF-hand 383 523 IPR011992 -
Vivi1233g00007 543 Gene3D - 351 529 - -
Vivi1233g00007 543 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Vivi1233g00007 543 MobiDBLite consensus disorder prediction 42 67 - -
Vivi1233g00007 543 SMART serkin_6 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1233g00007 543 FunFam Calcium-dependent protein kinase 1 351 526 - -
Vivi1233g00007 543 MobiDBLite consensus disorder prediction 1 76 - -
Vivi1233g00007 543 Pfam Protein kinase domain 85 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1233g00007 543 FunFam calcium-dependent protein kinase 1 171 350 - -
Vivi1233g00007 543 Pfam EF-hand domain pair 460 523 IPR002048 GO:0005509
Vivi1233g00007 543 Pfam EF-hand domain pair 391 451 IPR002048 GO:0005509
Vivi1233g00007 543 ProSitePatterns EF-hand calcium-binding domain. 435 447 IPR018247 -
Vivi1233g00007 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vivi1233g00007 543 Gene3D Phosphorylase Kinase; domain 1 86 170 - -
Vivi1233g00007 543 ProSiteProfiles EF-hand calcium-binding domain profile. 497 528 IPR002048 GO:0005509
Vivi1233g00007 543 FunFam Calcium-dependent protein kinase 1 87 170 - -
Vivi1233g00007 543 ProSitePatterns EF-hand calcium-binding domain. 399 411 IPR018247 -
Vivi1233g00007 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 79 518 - -
Vivi1233g00007 543 MobiDBLite consensus disorder prediction 20 41 - -
Vivi1233g00007 543 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Vivi1233g00007 543 ProSiteProfiles EF-hand calcium-binding domain profile. 422 457 IPR002048 GO:0005509
Vivi1233g00007 543 SUPERFAMILY Protein kinase-like (PK-like) 65 368 IPR011009 -
Vivi1233g00007 543 ProSiteProfiles EF-hand calcium-binding domain profile. 386 421 IPR002048 GO:0005509
Vivi1233g00007 543 SMART efh_1 462 490 IPR002048 GO:0005509
Vivi1233g00007 543 SMART efh_1 426 454 IPR002048 GO:0005509
Vivi1233g00007 543 SMART efh_1 497 525 IPR002048 GO:0005509
Vivi1233g00007 543 SMART efh_1 390 418 IPR002048 GO:0005509
Vivi1233g00007 543 ProSiteProfiles EF-hand calcium-binding domain profile. 458 493 IPR002048 GO:0005509
Vivi1233g00007 543 ProSitePatterns Protein kinases ATP-binding region signature. 91 118 IPR017441 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1233g00007 1 536 EF-hand Containing Proteins AT5G12180 77.612 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vivi1233g00007 Pkinase 2.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1233g00007 K13412 - gmx:100781355 912.138