Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1231g00001 ATGGCAAAACCAGGGGTATTGGATTCTGATCCAGAGATTATGGTGAAGAAAGTCTTGGAGATGAAGAAGGAATTAAAGAAGCTTGTGAAGTCCATTGTTGAGGATGAAGATACAAGCATTGAAGCTATTGATAAAGCAAAAGAAACTCTTTGTGTTCTTAAGGATTTGAAGCTTAGAAAGAAATCTCAATCTTCAATGTCTTTTAAGATAAACAAGAATGTTACTTTCCCAGATGAATTCAAATGTCCACTTTCTAAAGAATTGATGAGAGATCCTGTCATTGTTGCTTCTGGCCAGACATATGATAGACCATTCATTCAAAGGTGGTTGAATGCTGGAAATAGGACATGCCCTCAAACTCATCAAGTTCTCTCACACACTCTCCTTACTCCAAATCATCTTATAAGAGATATGATAGAAAAATGGTCTAAAAATCAAGGGATTGAATTGTGCAATGTTATTAGTTATATCAATGGTGAAGGTGCTAAAGAAGCTGATCAGAATCACTTTTTATGTTTGCTAGAGAAAATGTCATCAACACTTTGTGATCAGAAAGAAGCTGCAAAACAACTTAGGTTGTTGACAAAGAAGCATCCTTGTTTTAGAGTACTTTTTTGCGATTTCGAAGATGCAATTCCTCAGTTGCTTAAGCCTATTTGCGAAGGAAATAGTATTAGCCACGATCTTCAAGAAGACGTGATCACGACACTTCTCAATATCTCGATCCATGACAACAATAAGAAACAAGTAGCCGAAACTCCGACGGTGATTCCACTCCTTATGAAGTCATTGAGATGTGGAACAATCGAGACACGAGCCAATGCTGCAGCGACTCTTTTCACGTTATCAGCACTAGACTCGAATAAAGAACTTATAGGAAAATCTAACGCCTTGAAACCTCTTATCGATTTATTAGAAGAAGGGAATCCCTTAACTATGAAAGATGTTGCTTCAGCAATATTCACCTTATGTATGATGCACGACAACAAGGCAAGAGCGGTGAAAGACGGTGCGGTTAGAGTGATTATGACAAAGATGAAGAACCGACTTCACGTCGACGAATTACTAGCTATCCTCGCGCTACTTTCGACTCATCAGAAAGCTGTTCTTGAAATGGCAGAGCTTGGAGCTGTTCCTTGTTTGCTAAGCATCATGCGAGAGAGCTCGTGCGAGCGCAATAAGGAGAATTGCGTAGCGATTCTTCAAACTATATGTCTATATGATAGATCCAAGTTGAGGGAAATAAAGGAAGAAGAGAATAGCTATAGAACAATATCTGAACTTGCAAAAAATGGAACATCAAGGGCTAAGAGGAAAGCTAGTGGAATTCTTGAGAGGTTGCATAGGGTTGTTAATATTACACACACTGCATAA 1374 0.3857 MAKPGVLDSDPEIMVKKVLEMKKELKKLVKSIVEDEDTSIEAIDKAKETLCVLKDLKLRKKSQSSMSFKINKNVTFPDEFKCPLSKELMRDPVIVASGQTYDRPFIQRWLNAGNRTCPQTHQVLSHTLLTPNHLIRDMIEKWSKNQGIELCNVISYINGEGAKEADQNHFLCLLEKMSSTLCDQKEAAKQLRLLTKKHPCFRVLFCDFEDAIPQLLKPICEGNSISHDLQEDVITTLLNISIHDNNKKQVAETPTVIPLLMKSLRCGTIETRANAAATLFTLSALDSNKELIGKSNALKPLIDLLEEGNPLTMKDVASAIFTLCMMHDNKARAVKDGAVRVIMTKMKNRLHVDELLAILALLSTHQKAVLEMAELGAVPCLLSIMRESSCERNKENCVAILQTICLYDRSKLREIKEEENSYRTISELAKNGTSRAKRKASGILERLHRVVNITHTA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1231g00001 457 SMART arm_5 243 284 IPR000225 GO:0005515
Vivi1231g00001 457 SMART arm_5 365 406 IPR000225 GO:0005515
Vivi1231g00001 457 SMART arm_5 285 325 IPR000225 GO:0005515
Vivi1231g00001 457 FunFam RING-type E3 ubiquitin transferase 75 149 - -
Vivi1231g00001 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 149 IPR013083 -
Vivi1231g00001 457 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Vivi1231g00001 457 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Vivi1231g00001 457 FunFam RING-type E3 ubiquitin transferase 352 453 - -
Vivi1231g00001 457 SUPERFAMILY RING/U-box 75 153 - -
Vivi1231g00001 457 Gene3D - 152 452 IPR011989 -
Vivi1231g00001 457 CDD RING-Ubox_PUB 77 129 IPR045210 -
Vivi1231g00001 457 PANTHER U BOX DOMAIN-CONTAINING 42 446 - -
Vivi1231g00001 457 SUPERFAMILY ARM repeat 181 447 IPR016024 -
Vivi1231g00001 457 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1231g00001 138 457 U-box Gene Family AT3G07360 60.000 2.21e-126 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1231g00001 - - gmx:100777031 699.893