Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1230g00001 ATGACTAGGGCTATTAGGAATAGGGTACTCAAAGATGCTAATGGTGATATTAGTGATCATTTACGAAACCATATTCATTTAACAAATTGTATTCACTTGAAGAACCATATGCATAAAAACAGTCCAATAATTGCTGATAGGTCTATTATGAGAGACCTTGTTGTGCTTCAGAGATCGCGGTCTCTTCGGGATCCTTCTGCGAGTCCTCCGTCGTGGCATTCTCCTTCTGTGGTTGACTTGCTTTTTAAAAGAGGAGAAAATGATGGTGTGAATCAAGGGGGGAGAAGGTCGGTGGGTGTTGATAGTCGGAAGGAAGGTAGGAGGTTGTCTGGAATTGGAAACTCGCCACCGGTGGTGAGTAAAGGTACAGCAAGAGTTGCTCCGGGGGAGGCTAGTAGGGGTAATGATGCAGTGCCGGCGGTAACTAGTGAGCGAAGTAGTAGGAGCGGGATCGGGGATGGGAGGAGAGTTGGGAGAGAAGAATCTGGCAGGAAGAGTAATAGGCCTGATTATTTGGAAGTTATCAGTCAAGAGCAACTTCTTCATGAGGCCGGCAAAAGTTTGGCTGAAGATATTGTTTCGAGGCACTCTCAATCTTTGGAGAGAAAGAGTAGACAGCGGGGAAAGAATGCTCGAGAAGTTAAGACTCTTTCTGAGCAGCTGAATGATGTTCCTTTGGAAAGTGATGATTTAGCATCATCGAACATTCATTTTCGGGCAAGGTTTCCGAGACAAGAGAAAATTGTTGAGGCACAACAAGCCAGCATGCGCAGTCATGGAAATGGAATGAATAGGACAAAAAGGCGCAAATTCCGAAGTGCGAGGAGAGCTCGGGTTGCTACAACGTCAAGAGATATTGGAGCCGAGAATGAATTGTCTGTGGCTTCAAACTCATTTGCCGAGGGTTCAACTCACCAGAAATATCACTCGGAGGAGGTCAATGATTATGCAAATGATAATGTTACTAGAGCACCCAAAAATGGTTGTGGCATGCCTTGGAATTGGTCCAGAATTCATCATAGAGGTAAATCTTTCCTTGACATTGCTGGAAGAAGTTTGTCCTGTGGTTTATCTGACTCAAGGTTAAAGAAAGGGACGTCTTTAGCTTCAAATGGACGAAATATTTCTGTGATGCCTGTGGCAGCTGACGGCTCTAGCTCATGTACTAACTCTGAAGCAGAGGCACTACCTTTACTGGTTGACGCATCTGGATCTCATGGAAGCACGGAAAATGCTTGTTGGGGCCGTGATTATTCAGGCGAACTATGTATTTATGGTGACAATTTATTGAAGCAAGATATCGATTCTGATCTTGCTTCTGAAGCTAGATCTGGTAGCCAACATAATAAGTTGAGACGGAATCATCATAGTAGACATCAAAGTTTAACACAAAAGTATATTCCACGAACCTTCAGAGATATGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCGAATGCAGTGATGAGACGGAAAGTTGGATTGCTGTATGTGTTTTATGGTCCCCATGGCACCGGGAAAACCTCGTGTGCTCGTATATTTGCAAGAGCTTTGAATTGCAGTTCGATAGAACACCCAAAACCTTGTGGCTTCTGCAATTATTGCGTAGCACATGATATGGGAAAGAGTAGAAATATAAAGGAAGTTGGTCCAGTCAGTAATTTTGACTTCGAGAACATCATGGATCTACTCGACAATATGACTGTTTCCCATCTTCCGTCACAGTACAGAGTGTTTATTTTCGATGATTGTGATACTCTATCGGCTGATTGTTGGAATGCTATATCCAAGGTCATTGATCGAGCTCCTAGACGTGTGGTTTTTATCCTTGTCAGTACTAGTCTTGATGTCTTGCCTCATATAATAATATCTAGGTGTCAAAAATTCTTTTTCCCAAAGTTGAAGGATTCGGATATTGTAAATACACTGCAGTGGATTGCAACCAAAGAAGGTCTCGATATTGATAAGGATGCACTGAAACTCATCGCATCAAGGTCAGACGGATCGTTGAGAGACGCCGAGATGACACTTGAACAACTTAGTTTGCTTGGGCAGAGAATTTCCGTTCCTCTTGTTCAAGAATTGGTAGGACTTATCTCTGATGAAAAGTTGGTGGATCTGCTTGATTTGGCTTTATCAGCGGACACGGTAAACACTGTAAAAAATTTGAGAGTGATAATGGAAGCAGGAGTTGAACCATTAGCATTGATGTCACAGCTTGCTACAGTAATTACAGATATACTTGCCGGGACCTATAATTTCGCTAAAGAAAGGCGAAGAAGGAAGTTCTTCCGAAGACAACCATTATTGAAAGAAGACATGGAAAAGCTTCGTCAAGCTCTGAAGACTTTATCTGAGGCGGAGAAGCAGTTAAGAATGTCCAATGACAAGCTAACCTGGTTGACTGCTGCGTTACTTCAACTTGCTCCTGACCAGCAGTATGGTCTGCCGACTTCATCTGATAATAGTTTCCACCATAGTCCCTTCGCTCTAAATAACAGAAATGTAAAAGAAGCTACTAGAAACACCAGTAATCCTGTTGAAATTCCTAATAGGACAAGACGAATGTCAATGGATGCTAGAACAGAAAATTCTAATGCTGGACATTCAACAGATAGAAGACATAGCGTTTCTGGTTATGCTCCTCAACATACTTGTTCACATTCCACTGATAAGACTAGGATAAATGAAAGGCAGAATTTGGATAAAAACCGCAAAGAAATCGAAGAGATATGGTTAAAGGTGCTAGAGAGGATTGACTATTCTGGTCTCAAAGAGTTTTTGTATAAAGCAGGAAAGCTGATCTTCATTAGTTTCGGGGCAGCTCCAACTGTGCAACTAATGTTTAACTCTCAACTTTCAAAATCCACGGCTGAGAAGTTCACTGGTTTCATCTTACAAGCATTTGAATCTGTCCTCGGATCTTCCGTAACCATAGAAATTAGATGTGAATCGAATAAAGATGCAGACTCGCCTCTTGTATTGCCTGCTATCAACGACGGTACATCTCAGATACGAGACTTAATTGATGTTGGCACTGAAAAGAGACGGGGCGAAATTGTAGAAGAAGAAGAAGAAGCCTCTCATATGGAGCACACGAATAATGGGCAGCAGAGTATGGGACAAGTGTCAACGTCTCAAAAAACACCGAGTGTTGTGTCACATAGTCAAAGTCGAAGTCTCGTAAGAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAAGCAGAAAGTCAACGAAGTGGATGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTCGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGAGCTTGCTAGGCTGGAGAGCATCTAGAGCAACTCGTCGGAAGCTGTCGCGCTTGAAAATACGAACCCGAAAAACACGCGCGTTGCTGAATCTTGTCTCATGCGGGCAATGTCTCTCCACAAAATCTCCCAGATCACAACCAACTTCTTATTTCTTCATGTTCAAGTAA 3486 0.4257 MTRAIRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPIIADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRGENDGVNQGGRRSVGVDSRKEGRRLSGIGNSPPVVSKGTARVAPGEASRGNDAVPAVTSERSSRSGIGDGRRVGREESGRKSNRPDYLEVISQEQLLHEAGKSLAEDIVSRHSQSLERKSRQRGKNAREVKTLSEQLNDVPLESDDLASSNIHFRARFPRQEKIVEAQQASMRSHGNGMNRTKRRKFRSARRARVATTSRDIGAENELSVASNSFAEGSTHQKYHSEEVNDYANDNVTRAPKNGCGMPWNWSRIHHRGKSFLDIAGRSLSCGLSDSRLKKGTSLASNGRNISVMPVAADGSSSCTNSEAEALPLLVDASGSHGSTENACWGRDYSGELCIYGDNLLKQDIDSDLASEARSGSQHNKLRRNHHSRHQSLTQKYIPRTFRDMVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCSSIEHPKPCGFCNYCVAHDMGKSRNIKEVGPVSNFDFENIMDLLDNMTVSHLPSQYRVFIFDDCDTLSADCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVNTLQWIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYNFAKERRRRKFFRRQPLLKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTSSDNSFHHSPFALNNRNVKEATRNTSNPVEIPNRTRRMSMDARTENSNAGHSTDRRHSVSGYAPQHTCSHSTDKTRINERQNLDKNRKEIEEIWLKVLERIDYSGLKEFLYKAGKLIFISFGAAPTVQLMFNSQLSKSTAEKFTGFILQAFESVLGSSVTIEIRCESNKDADSPLVLPAINDGTSQIRDLIDVGTEKRRGEIVEEEEEASHMEHTNNGQQSMGQVSTSQKTPSVVSHSQSRSLVRSKVSLAHVIQQAESQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLGWRASRATRRKLSRLKIRTRKTRALLNLVSCGQCLSTKSPRSQPTSYFFMFK 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1230g00001 1161 MobiDBLite consensus disorder prediction 1032 1059 - -
Vivi1230g00001 1161 MobiDBLite consensus disorder prediction 85 170 - -
Vivi1230g00001 1161 Pfam DNA polymerase III subunits gamma and tau domain III 690 749 IPR022754 GO:0003887
Vivi1230g00001 1161 SUPERFAMILY post-AAA+ oligomerization domain-like 705 808 IPR008921 GO:0003677|GO:0006260
Vivi1230g00001 1161 Gene3D - 451 631 IPR027417 -
Vivi1230g00001 1161 CDD HLD_clamp_pol_III_gamma_tau 634 697 IPR045085 -
Vivi1230g00001 1161 FunFam DNA polymerase III subunit gamma/tau 456 633 - -
Vivi1230g00001 1161 MobiDBLite consensus disorder prediction 149 168 - -
Vivi1230g00001 1161 SMART AAA_5 493 634 IPR003593 GO:0016887
Vivi1230g00001 1161 Gene3D - 635 697 - -
Vivi1230g00001 1161 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 463 848 - -
Vivi1230g00001 1161 MobiDBLite consensus disorder prediction 441 463 - -
Vivi1230g00001 1161 FunFam DNA polymerase III subunit gamma/tau 635 697 - -
Vivi1230g00001 1161 MobiDBLite consensus disorder prediction 1022 1059 - -
Vivi1230g00001 1161 Coils Coil 770 797 - -
Vivi1230g00001 1161 NCBIfam DNA polymerase III subunit gamma/tau 460 808 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vivi1230g00001 1161 MobiDBLite consensus disorder prediction 841 898 - -
Vivi1230g00001 1161 Pfam DNA polymerase III, delta subunit 477 634 - -
Vivi1230g00001 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 681 IPR027417 -
Vivi1230g00001 1161 MobiDBLite consensus disorder prediction 253 273 - -
Vivi1230g00001 1161 MobiDBLite consensus disorder prediction 860 889 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1230g00001 460 746 Core DNA Replication Machinery Family AT1G21690 24.658 9.00e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1230g00001 - - gmx:100809005 1749.95