Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi122g00004 ATGGGAAGAGGGAAGGTTGTTCTTGAGAGAATCCAGAACAAGATCAATAGACAAGTTACATTCTCAAAGAGAAGAAGTGGTTTGCTCAAGAAAGCATTTGAACTTTCTGTGTTATGTGATGCTGAAGTTGCGCTTATCATCTTCTCAGGCCTTGGCAAGCTTTTTCAATACAGTTCCTCTGATTTGAACAAAATCATTGAGAAGTATCGTCAATGTTGCTTCAACAATTTGTCTGAGAATGGTGACTTGGAAGAACATGAGTCACAGGGTTTATACGAGGAGCTTTTGATGTTAAGAGTTAAGCATGAATCTCTTGCCCAGACTCAAAGGAATTTTTTGGGAGAAGAAATCAGTGCACTAAGCATAAAAGATTTGCAGAATATAGAAAAACAACTAGAGAGAACGCTTGCACAAGCTCGAAAGCACCAAATTCAGAAACTGATGGCACGAGTTGATGAATTACGCCAAGAGGTGCACAAAGTGGAGGAGATTAATAAACAATTAGAATCCAAGGAAAGAGGTTTAAGCACCAATGTTTGTGCCTATTCTACTGATTTAACCATCTCCAACAACAACAATATCATTACAAATTTGCATGATGCACAAGTCAATGAGTGTGAATATAGTCAGTTTCGGCACCAACAAGCTGCTTCAAAAGGACAGGCAACAGATACAAGGACTGATAGAGGCCAGAGTAGTCGCAACAAGAATAATGGATGGATGAATATTTGA 732 0.388 MGRGKVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSGLGKLFQYSSSDLNKIIEKYRQCCFNNLSENGDLEEHESQGLYEELLMLRVKHESLAQTQRNFLGEEISALSIKDLQNIEKQLERTLAQARKHQIQKLMARVDELRQEVHKVEEINKQLESKERGLSTNVCAYSTDLTISNNNNIITNLHDAQVNECEYSQFRHQQAASKGQATDTRTDRGQSSRNKNNGWMNI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi122g00004 243 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Vivi122g00004 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 197 - -
Vivi122g00004 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi122g00004 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi122g00004 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi122g00004 243 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi122g00004 243 FunFam MADS-box transcription factor MADS-MC 13 88 - -
Vivi122g00004 243 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Vivi122g00004 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi122g00004 243 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi122g00004 243 Coils Coil 122 171 - -
Vivi122g00004 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi122g00004 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi122g00004 243 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Vivi122g00004 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi122g00004 243 MobiDBLite consensus disorder prediction 210 243 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi122g00004 1 169 MADS-box Gene Family AT3G61120 52.071 3.57e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi122g00004 K-box 8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi122g00004 K09264 - gmx:100793681 280.411