Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1222g00008 ATGGTTCACTCAAACTCAAATTTTAAAACGCTAAATTCTCTCTCTAAACTCTTCATTTCTTCCTTTCTCCTCCTATACACCGCCATTGCCGATGACGGCGTTTTCATGTCGAAGCTCGCGAAATCACTTTCACCAACTCCGACAGGGTGGACGACGGCGAGCTCATTCTGCACCTGGAACGGCGTGAAATGCGACTCTAACCGCGTTACATCGATCAACTTAACTTCCAAGTCACTCACCGGAACACTACCTTCCGATCTGAACTCACTCTCTGAACTCACGATAATCGATTTCCAGTCCAACTCGCTCACCGGCGTGTTACCTTCACTCGCTAATCTATCTAATCTTCAATCAGTTTTTCTCAGTAGTAACAACTTCACCTCAATCCCCGATGGTTGTTTTCAGGGACTCACTAGTCTCCAGAAGCTTTCCATGAGTGGAAATACCATCCTCAAACCGTGGAAGTTTCCATCTGAGTTGACTCAGTCTTTGAATCTCGTTGAACTCGACCTTGGACAAACGAATCTCATTGGTTCCTTGCCGGATATATTTGCTCCATTGTTCAGTTTGAAGAAACTTCGTCTCTCTTACAACAACCTCACCGGAGCTTTACCGAACTCGTTCTCAGGATCTGGGATTCAGAACTTGTGGCTCAACAACCAACAAGATGGTTTTGGGTTCACTGGTTCTCTTGATTTGCTTTCTTCAATGTCTCACTTGACTCAAGCGTGGTTTCTGAAGAACAAGTTCACTGGACCCATTCCTGATTTAACAAACTGTACTAATTTGTTTGATCTTCAGCTTCGTGATAATCAGTTAACAGGCGTTGTTCCGCAATCTTTGATGAGTTTACTTAGTTTGACGAATGTTTCATTGGATAACAATTATTTACAGGGTCCTTTTCCTTCTTTTGGGAAAGGTGTAGAGGTTACTCATGATGGGATCAATAGCTTTTGTAAAGATACTCCTGGACCTTGTGATCCGAGGGTTACTACTTTGCTTGATGTTGCTGCTGGTTTTGGGTATCCTCTTCAGTTGGCTAGTTCTTGGAAAGGGAATGATCCTTGTCTAGATTGGAGCTTTGTTGTGTGTTCTGGAGGGAAGATTATTACTGTGAACTTAGCTAAGCAGAATTTAAATGGAACAATTTCACTTGCATTTGGGAATTTAACTGATTTGAGGAATTTGTATTTGGATGGTAACAACTTGTCTGGTTCCATACCGGGGAGCTTGACGGGTTTGACTCAACTTGAGGTTTTAGATTTGTCTAACAACAATCTATCTGGAGAGATTCCTAAATTTTCTACTAAAGTGAAGCTCAATTCTGCTGGTAATGTTTTGCTCGGGCCTTCTGGAGGTGATAGGGGAAGTGGAGCAACTCCGCCAGAGAGTTTTGGTGGTGCACCAAGTGGAAGTCCATCGGGAAAGTCAAGTGGTTCTTCGCTGTCACCTGCTTGGATTGGTGGTATAGCTGTTGTTGCTTTGTTTTTTATTGCAGTGGTGTTGTTTGTGTTTGGTAAGTGTTATTCTAAAAACTGGCTTGGTGGAGTTCCAAGCAAGTTACAGAATCAGGGAGTTCCCGGAAGTGAGCTAAGTGACCTTCAGGTTTTTGAGGGTGGAAATTTTACTTTTTCATTCCATGTTCTTAGGCAAGTAACCGGAAATTTCAGTGAAGATAATATTTTGGGTAGGGGAGGATTCGGAGTTGTTTATAAAGGGGAGTTGCACGATGGAACTAAGATTGCCGTGAAGAGGATGGAATCTGTTGCAGTGGGAACTAAAGGATTGAATGAGTTCGAAGCAGAGATTGCAGTTCTAACTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATTCTGCATTAATGGAAATGAAAGGCTTTTGGTGTATGAGTATATGCCTCAAGGAACATTAACACAGCATCTGTTTGATTGGGGTAAAAATGGACGTGCTCCTTTGACTTGGAAACAAAGGGTAGCAATAGCTTTAGATGTAGCGCGAGGTATGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCCAACATATTATTGGATGATGACATGAGAGCAAAGGTTGCTGATTTTGGGTTGGTGAAAAATGCACCGGATGGGAAATTTTCGATTGAAACAAGGTTGGCGGGAACACTTGGATATTTGGCACCTGAATATGCAGCTACTGGAAGAGTTACAACCAAAGTAGATGTTTATGGATTTGGAGTAGTTTTGATGGAACTGATTACGGGTAGAAGGGTATTAGAAGATACCATGTCTGATGAAAGATCTCATCTAGTTTCATTGTTCCGTCGAGTATTGGTCAACAACGAAAATATCTCCAACACAATCGATCAAACACTCAATCCCGATGAAGAAACCATGAAGAGCATAAATAAGGTGGCTGAGCTTGCAGGCCACTGCAATGCTCACAAACCATATGAGAGGCCAGATATGGGTCATGCAGTGAATGTCTTGGTTCCTTTAGTAGAGCAATGGAAGCCTAGCAACCATGAAGAAGAAGATGGTTATGATGTTGACCTTCACTCGAGTCTTCCTCAAGCTCCGCAAAGATGGCAAGCCAATGAAAGTATTTCCACAATATTTAATGACAAGTCGTTCTCGCAAAATCCAATCAAGTACTTCAACAAAACTTGTTAG 2679 0.4222 MVHSNSNFKTLNSLSKLFISSFLLLYTAIADDGVFMSKLAKSLSPTPTGWTTASSFCTWNGVKCDSNRVTSINLTSKSLTGTLPSDLNSLSELTIIDFQSNSLTGVLPSLANLSNLQSVFLSSNNFTSIPDGCFQGLTSLQKLSMSGNTILKPWKFPSELTQSLNLVELDLGQTNLIGSLPDIFAPLFSLKKLRLSYNNLTGALPNSFSGSGIQNLWLNNQQDGFGFTGSLDLLSSMSHLTQAWFLKNKFTGPIPDLTNCTNLFDLQLRDNQLTGVVPQSLMSLLSLTNVSLDNNYLQGPFPSFGKGVEVTHDGINSFCKDTPGPCDPRVTTLLDVAAGFGYPLQLASSWKGNDPCLDWSFVVCSGGKIITVNLAKQNLNGTISLAFGNLTDLRNLYLDGNNLSGSIPGSLTGLTQLEVLDLSNNNLSGEIPKFSTKVKLNSAGNVLLGPSGGDRGSGATPPESFGGAPSGSPSGKSSGSSLSPAWIGGIAVVALFFIAVVLFVFGKCYSKNWLGGVPSKLQNQGVPGSELSDLQVFEGGNFTFSFHVLRQVTGNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAVGTKGLNEFEAEIAVLTKVRHRHLVALLGFCINGNERLLVYEYMPQGTLTQHLFDWGKNGRAPLTWKQRVAIALDVARGMEYLHSLAQQSFIHRDLKPSNILLDDDMRAKVADFGLVKNAPDGKFSIETRLAGTLGYLAPEYAATGRVTTKVDVYGFGVVLMELITGRRVLEDTMSDERSHLVSLFRRVLVNNENISNTIDQTLNPDEETMKSINKVAELAGHCNAHKPYERPDMGHAVNVLVPLVEQWKPSNHEEEDGYDVDLHSSLPQAPQRWQANESISTIFNDKSFSQNPIKYFNKTC 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1222g00008 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 681 693 IPR008271 GO:0004672|GO:0006468
Vivi1222g00008 892 FunFam receptor protein kinase TMK1 519 633 - -
Vivi1222g00008 892 Gene3D Phosphorylase Kinase; domain 1 519 633 - -
Vivi1222g00008 892 ProSiteProfiles Leucine-rich repeat profile. 416 438 IPR001611 GO:0005515
Vivi1222g00008 892 Gene3D Transferase(Phosphotransferase) domain 1 634 858 - -
Vivi1222g00008 892 PANTHER OSJNBA0070M12.3 PROTEIN 18 871 - -
Vivi1222g00008 892 SMART LRR_typ_2 414 438 IPR003591 -
Vivi1222g00008 892 SMART LRR_typ_2 187 210 IPR003591 -
Vivi1222g00008 892 SMART LRR_typ_2 90 112 IPR003591 -
Vivi1222g00008 892 SMART LRR_typ_2 137 163 IPR003591 -
Vivi1222g00008 892 SMART LRR_typ_2 113 136 IPR003591 -
Vivi1222g00008 892 SMART LRR_typ_2 390 413 IPR003591 -
Vivi1222g00008 892 Pfam Leucine Rich Repeat 189 209 IPR001611 GO:0005515
Vivi1222g00008 892 Pfam Leucine rich repeat N-terminal domain 331 365 IPR013210 -
Vivi1222g00008 892 Pfam Leucine rich repeat N-terminal domain 38 65 IPR013210 -
Vivi1222g00008 892 ProSiteProfiles Protein kinase domain profile. 556 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1222g00008 892 SUPERFAMILY L domain-like 38 440 - -
Vivi1222g00008 892 ProSiteProfiles Leucine-rich repeat profile. 115 136 IPR001611 GO:0005515
Vivi1222g00008 892 ProSitePatterns Protein kinases ATP-binding region signature. 562 584 IPR017441 GO:0005524
Vivi1222g00008 892 Pfam Protein kinase domain 557 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1222g00008 892 Gene3D Ribonuclease Inhibitor 34 325 IPR032675 -
Vivi1222g00008 892 SUPERFAMILY Protein kinase-like (PK-like) 534 832 IPR011009 -
Vivi1222g00008 892 SMART serkin_6 556 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1222g00008 892 FunFam Leucine-rich repeat receptor-like kinase 328 451 - -
Vivi1222g00008 892 MobiDBLite consensus disorder prediction 451 476 - -
Vivi1222g00008 892 CDD STKc_IRAK 562 835 - -
Vivi1222g00008 892 FunFam receptor protein kinase TMK1 634 851 - -
Vivi1222g00008 892 FunFam Receptor-like kinase TMK4 30 324 - -
Vivi1222g00008 892 PRINTS Leucine-rich repeat signature 414 427 - -
Vivi1222g00008 892 PRINTS Leucine-rich repeat signature 190 203 - -
Vivi1222g00008 892 Gene3D Ribonuclease Inhibitor 328 450 IPR032675 -
Vivi1222g00008 892 Pfam Leucine rich repeat 92 150 IPR001611 GO:0005515
Vivi1222g00008 892 Pfam Leucine rich repeat 372 427 IPR001611 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1222g00008 83 835 Receptor kinase-like Gene Family AT5G65700 33.248 7.77e-89 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vivi1222g00008 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1222g00008 K00924 - gmx:100783655 1281.93