Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi121g00018 ATGTCCTTGAAATGTTTATGCTGTTTTCTCTCTAATGAAGATGAAAGTCCAAGACGGAATGTTGATGAGAAGAAAAATAGTAGGGATTATCCATGGGAAAGATACACTTTGAAGGAGTTGCTTCGTGCAACAAATAACTTTCATCAAGATAACAAAATTGGAGAAGGTGGATTTGGAAGTGTATATTGGGGTCAGACAAATAAAGGCGTTGAGATTGCTGTGAAGAGGTTGAAGACAATGACTGCGAAAGCCGAGATGGAATTTGCGGTTGAAGTGGAAGTACTTGGAAGGGTGAGGCATAGGAATTTGTTAGGATTGAGGGGATTCTATGCAGGAGGAGATGAAAGGTTAATTGTGTATGATTACATGCCTAATCATAGTCTACTCACTCATTTACATGGTCAACTTGCCTCTGATTGTTTACTAGATTGGCCTAGAAGAATGAACATAACAATTGGAGCAGCTGAAGGTTTAGCGTACTTGCACCATGAGGCAAATCCTCACATAATCCATAGAGACATAAAAGCAAGCAATGTTCTATTAGACACAGAATTTCAAGCCAAGGTAGCTGATTTTGGTTTTGCAAAGCTAATACCAGAAGGCGTAAGCCATCTAACAACAAGAGTCAAAGGCACACTAGGCTATTTAGCACCAGAATATGCTATGTGGGGGAAAGTTTCCGAAAGCTGTGATGTTTACAGTTTTGGAATCTTGCTTTTAGAAATCATTAGTGCAAAAAAACCGATCGAAAAACTACCTGGTGGAATAAAAAGGGACATTGTTCAATGGGTGACACCCTATGTACAAAAGGGTGTTTTTAAACACATTGCTGATCCAAAATTGAAAGGAAATTTTGATTTAGAGCAGTTAAAATCTGTGATTATGATAGCTGTTATGTGCACTGATAGTAGTCCTGATAAAAGGCCTAGTATGATAGAGGTTGTGGAATGGCTTAAAGATGGTGTTTTGAAGAGGAAAAAAGAGGTTCCAAATTTGAGTAGTGGCAATAATAATAATAATAAGGGAGATGGTGAAGAAAATGATGAAAATTATGAAGAGTTTGTGACAATGCAGTCTAATAATTTGAAAATACTAAGTGATAATGATAGGCGCAAAATGAGGTGA 1125 0.3742 MSLKCLCCFLSNEDESPRRNVDEKKNSRDYPWERYTLKELLRATNNFHQDNKIGEGGFGSVYWGQTNKGVEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHRNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGQLASDCLLDWPRRMNITIGAAEGLAYLHHEANPHIIHRDIKASNVLLDTEFQAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKLPGGIKRDIVQWVTPYVQKGVFKHIADPKLKGNFDLEQLKSVIMIAVMCTDSSPDKRPSMIEVVEWLKDGVLKRKKEVPNLSSGNNNNNKGDGEENDENYEEFVTMQSNNLKILSDNDRRKMR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi121g00018 374 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi121g00018 374 Gene3D Phosphorylase Kinase; domain 1 10 122 - -
Vivi121g00018 374 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi121g00018 374 FunFam PTI1-like tyrosine-protein kinase At3g15890 19 122 - -
Vivi121g00018 374 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 331 - -
Vivi121g00018 374 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Vivi121g00018 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vivi121g00018 374 MobiDBLite consensus disorder prediction 328 348 - -
Vivi121g00018 374 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Vivi121g00018 374 FunFam PTI1-like tyrosine-protein kinase At3g15890 123 333 - -
Vivi121g00018 374 Pfam Protein kinase domain 47 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi121g00018 374 SUPERFAMILY Protein kinase-like (PK-like) 28 324 IPR011009 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi121g00018 33 331 Receptor kinase-like Gene Family AT1G60800 44.702 5.27e-84 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vivi121g00018 Pkinase 3.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi121g00018 - - gmx:100817283 608.601