Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi121g00005 | ATGGTAGAACAACGACAAGAACAAACACAAAACTTCAGAGTTAAGACAATGACGACTACCAATGGGGATGAAAATGAGAATAGTTTAGAATTGGTTGAGCCAAAAGGTTCTAGAGAGGAGAAGGAGAAGAACAGGAAGAAGAAAAAAGCGAAATCCGTTGAGTCTCTGGTAATGGAGAAGAAGGTGGAGGATCATAATGCAGTTTCCAAGTTTAAGATATCGGAGCCGTTGAGAGAGAAGTTGAAGGAAAAGGGAATTGAGTCGTTGTTTCCTATTCAAGCAATGACGTTTGATACCATTCTGCATGGGTTTGATTTGGTTGGTAGAGCTCGCACTGGTCAGGGTAAAACTCTTGCCTTTGTGTTGCCAATTATAGAATCTATAACAAACGGTCCGGCAAAAGCATCGAGAAAGACTGGCGATGGGAGGCCACCGAGTGTTCTTGTGCTTTTACCTACGAGGGAATTGGCCTGTCAGGTGAATGCTGATTTTGAAGTTTATGGCGCGGCAATGGGACTGACATCTTGTTGTTTATATGGTGGAGCTTCTTATCAAGCTCAAGAGATTAAGCTTAAGAGAGGCGTGGACATTGTTATTGGCACACCAGGCCGCATAAAGGATCATCTAGAGCGGGGGAAAATTGACCTGAGCCAGCTAAAGTTTCGTGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTTTTGAAGATGTTGAACTGATCCTTGGTAAGGTTAAAAATGTAGGTAAAGTTCAGACGCTTCTTTTCAGTGCTACTTTGCCGGATTGGGTTAAGCATATTGCTAAGAAATTTCTTAAGCCAGATAAGGAAACTGCTGATCTTGTTGGAGATACAAAAATGAAGGCTAGTACCAGTGTTAGGCATATTATTCTTCCTTGTACTGGCTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCTCTTTTACAGCAGTGGAGGTCGAACAATTATATTCACGGAGACAAAGGAATCAGCATCTCAGCTCGCAGAGTTGTTGCCTGGAGCAAAAGCACTCCACGGCGACATACAGCAAGCACAACGTGAGGTTACTTTGTCTGCCTTTAGGTCTGGGAAATTCATGACATTAGTTGCAACTAATGTGGCTGCGCGGGGTCTGGATATTAATGATGTTCAGTTAATTATTCAGTGTGAACCTCCAAGGGATGTTGAAGCGTATATCCACCGTTCCGGGCGCACGGGAAGAGCAGGTAACACTGGAGTTGCTGTCATGCTTTATGATCCAAGGAGGTCGAATATATCTAAAATAGAAAGAGAGTCGGGTGTTAAATTTGAACATGTATCGGCCCCTCAGGCTAATGATATTGCCAAAGCTATTGGTGCAGAAGCTGCAGAAATGATAACTCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAGGATCTTTTAAATAACTCTGGTTTATCGGTCGTCGATTTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACAGAGATCAAGAAAAGATCTCTATTAACATCTATGGAGAACTATGTTACTTTACTTCTTGAGACCGGGAGACCTATCTTTACGCCAACTTTTGCATACAAAATGTTGAGGAGGTTTTTGCCTGAAGACAAGGTCGAGGCTGTGAAAGGTCTTACTATCACTGCAGATGGAAACGGTGTAGTTTTTGATGTACTAGCTGAAGATTTAGATACATATCTTGCTGGTAAGAAAAATGCCTCGGATGTAAGTTTAGAGGTATTAAAAGCTTTGCCTCGTCTGCAACAGAGAGATCAATCAAGGGGCGGCAGATTTGGAGATGGCAATGGTCGTGGGGGGAGAAGTGGTGGCGGCGGAAGGAATGGTAGATTTTCAAGTGATAGGTTTGTGAACGGTGGTGGTAGAGGTCGTGGCAACTGGGGTGGGAAAAGATGGTGA | 1938 | 0.436 | MVEQRQEQTQNFRVKTMTTTNGDENENSLELVEPKGSREEKEKNRKKKKAKSVESLVMEKKVEDHNAVSKFKISEPLREKLKEKGIESLFPIQAMTFDTILHGFDLVGRARTGQGKTLAFVLPIIESITNGPAKASRKTGDGRPPSVLVLLPTRELACQVNADFEVYGAAMGLTSCCLYGGASYQAQEIKLKRGVDIVIGTPGRIKDHLERGKIDLSQLKFRVLDEADEMLRMGFFEDVELILGKVKNVGKVQTLLFSATLPDWVKHIAKKFLKPDKETADLVGDTKMKASTSVRHIILPCTGSARSQLIPDIILFYSSGGRTIIFTETKESASQLAELLPGAKALHGDIQQAQREVTLSAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHVSAPQANDIAKAIGAEAAEMITQVSDSVIPAFKSAAEDLLNNSGLSVVDLLAKALAKAVGYTEIKKRSLLTSMENYVTLLLETGRPIFTPTFAYKMLRRFLPEDKVEAVKGLTITADGNGVVFDVLAEDLDTYLAGKKNASDVSLEVLKALPRLQQRDQSRGGRFGDGNGRGGRSGGGGRNGRFSSDRFVNGGGRGRGNWGGKRW | 645 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi121g00005 | 645 | MobiDBLite | consensus disorder prediction | 598 | 645 | - | - | |
| Vivi121g00005 | 645 | SUPERFAMILY | RNA-binding domain, RBD | 504 | 587 | IPR035979 | GO:0003676 | |
| Vivi121g00005 | 645 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 36 | 478 | - | - | |
| Vivi121g00005 | 645 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Vivi121g00005 | 645 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 144 | 423 | IPR027417 | - | |
| Vivi121g00005 | 645 | CDD | GUCT_RH7_like | 507 | 592 | - | - | |
| Vivi121g00005 | 645 | SMART | ultradead3 | 85 | 297 | IPR014001 | - | |
| Vivi121g00005 | 645 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Vivi121g00005 | 645 | SMART | helicmild6 | 334 | 411 | IPR001650 | - | |
| Vivi121g00005 | 645 | Pfam | DEAD/DEAH box helicase | 90 | 267 | IPR011545 | GO:0003676|GO:0005524 | |
| Vivi121g00005 | 645 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 97 | 279 | IPR014001 | - | |
| Vivi121g00005 | 645 | Gene3D | - | 30 | 279 | IPR027417 | - | |
| Vivi121g00005 | 645 | Gene3D | - | 303 | 517 | IPR027417 | - | |
| Vivi121g00005 | 645 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 309 | 450 | IPR001650 | - | |
| Vivi121g00005 | 645 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 223 | 231 | IPR000629 | - | |
| Vivi121g00005 | 645 | MobiDBLite | consensus disorder prediction | 28 | 52 | - | - | |
| Vivi121g00005 | 645 | Pfam | Helicase conserved C-terminal domain | 316 | 411 | IPR001650 | - | |
| Vivi121g00005 | 645 | FunFam | DEAD-box ATP-dependent RNA helicase 7 | 517 | 589 | - | - | |
| Vivi121g00005 | 645 | Pfam | GUCT (NUC152) domain | 500 | 595 | IPR012562 | GO:0003723|GO:0004386|GO:0005524 | |
| Vivi121g00005 | 645 | CDD | DEADc | 77 | 274 | - | - | |
| Vivi121g00005 | 645 | Gene3D | - | 518 | 589 | - | - | |
| Vivi121g00005 | 645 | CDD | SF2_C_DEAD | 294 | 420 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi121g00005 | 65 | 417 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 29.526 | 1.68e-39 | 148 |