Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1217g00001 ATGAAGCGTGCGAGGAGCACAGGGGAGTCCAGCTCCTCTAGGGTTTCGCCGAGTCTCGAAGCAGGAGTCATCAAGAAACTCCGGTTAGAGAATTTCATGTGTCATTCAAATCACGAAACTGTGTTTGGAAATCACGTTAATGTCATCACTGGACAAAATGGAAGTGGTAAAAGTGCAATACTTACTGCATTGTGTGTTGCGTTTGGTTGTCGAGCTAAAGGGACTCAAAGAGCATCTACTTTGAAGGATTTCATCAAAACTGGGGCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATGTACGGTGATGTTATCATTGTAGAACGTAGGATATCTGAATCCACAAGCTCTATCACATTGAAAGATCACCAAGGAAAGAAAGTTTTCAGTCGGAAAGCGGATCTTCAAGAAATCATTGAACATTTCAATATTGATGTGGAGAATCCGTGCGTGATAATGAGTCAAGACAAAAGCAGAGAGTTTTTGCATTCTGGGAATAATAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCCATTGAAATAACTACTGCACGTGGAATAGTTGAAGAATTAGAGACAGCAATAAAACCTATAGAGAAGGAGCTCAACGAACTGCAGGTTAAAATTAAAACGATGGAACACGTTGAACAAATTTCCATACAGGTTCAGCAGTTAAAAAAGAAACTTGCCTGGTCATGGGTTTATGACGCGGACAAGAAACTTGAGGAACAAAATGTAAAGATTGAAAAGCTGAAAAGCCGGGTTCCTACTTGTCAAGCTAAGATTGATAAACAACTGCATCAGCTTGAAAAATTAAGTGAAAACTTTTCTGCAAAGAAAGCTGAAATTGCAAATATGATGACATCACAAGTAAAGCAAATGAAGGAAACTTTAAGTCACTCGATGTCCCTGGCAAAAAAAGAAGTATTTGAACTACAGCGAGACTGCAATCGCAAAACTAGTAGCATACAGAAGATGGTACAACAGCTCAAAAGGCTTGAACTACAAATGCAGGATACTCACGAGCAGCATTTGAAAAATACCCAGGCTGAAGAATCTGACATGGAGGAAAAACTGAAGCAGCTTCGAGATGAGTTTAATGATGCTAAGTCCAAATATGATAGGCTGAAAGAAGAAGAGGCTATGTTAATGAACAGCAAAAATGGGCAAACTGATGAAATCCGTAGAATTGATGTTAAGATCCAAGATCATGAAAAGAAGTATAATGAAATCATGCATAATATTCGCAATCTTAAAAACCAACAAAGCAACAAGATCACAGCTTTTGGAGGAAATAAAGTGATTAATCTGTTACGTATAATTGAGAGATATCATCAAAGGTTTAAGATGCCTCCTATTGGTCCAATTGGTGCCCATCTGAAGTTGCGCAGTGGTAATAAATGGGCGGTTGCTGTTGAACATGCTATTGGGAGAATGCTCAATTCTTTTATAGTAACTGATCACAAGGATTTTCGTCTTTTGAAACAATGTGCAAAGGAAGCAAATTATGATCATCTTCAAATTATTATTTATGATTTTTCAACCCCAAGATTGATGATACCAGAGCACATGCTTCCTAATACAAACCATCCATCAACTCTTTCCATCTTACAATGCGAGAATCACACTGTGGTTAATGTCTTAGTAGATCTGGGAAATGTTGAGAGACAAGTGCTAGTTAGCGACTATAATACCGGGAAGGTTGTTGCCTTTGAAGAAAGGATCCAAAATCTGAAGGAGGTCTTCACTTTGGATGGTTGTAAAATGTTCTCGCGAGGTCCAGTACAAACAACTCTTCCTCCAAATAAGAGGCAGCGATATGGTCGTCTAACTAGTTCTGTTGAAGCTGATATTGAGAAACTTAGTCATGATGCATCTAATGAGCAAAAATACGCAAATGACTATAAAAGGAATAAAAGAGAGGCAGAGGTCAAGCTTGCGGATCTCGACGAGAAGATGACTTCTGTAAAGAGACTTTGTACAAGTGCTGGAAGAACTTTAAGTTCTACGAAAATAGCTTTGGAGGAGAAAACAAAGGAACAAGCTGCTGAACGTAGCTCGACACCTTTGTCCTCAGTTGATGAGATTGTTGAAGAAATTTCAGAAATAAACAAAAAAATAAAAGAAGAGCAGGAGTTGTTTGAAGCCCTTGAGCAGAGGAGGCTTGAAGCAGTGGGAAAAGCAAATGACCTTAATGTAAAATTTGACGAATTGTGTGAATCAGCGAATAATGAACTTGCTTCGCTTGAGAAAGCTGAGAGTGAACTTATGGAGATTGAAAGGGAAATAGATTCAGCAAAAAAGGCAAAAGATCATTATGATAATGTCATGAAAAACAAGGTCCTTCATGATATAAAGGTGGCAGAGGAACACTATCTGGAGTTTGCAGAAAGCCGCGAGGTAAATGTTGAGAAGGCTTCCATAATTTGCTGTGAGAATGAACTTGCTACGATAGGTGGTTGTGATGGGAAAACCCCAGAGCAAATCAGTGCCCAATTAGAAAGTCTGAATCATACACTTAGGCGTGAGAGCCAAAGATACTCCGAATCTATTGATGATCTGAGGATGCTATATGCAAAAAAAGAGCGAAAGATTGCGAAAAGGCAGCAAGTTTACAGAGCCCTTCGACAGAAATTGAATGCTTGCCAAAGTGCTTTGAAGTTTCGAATGAGAAAGTTTCAAGCAAATGCATCTAATCTCAAGCATCAGCTTTCTTGGAAATTTAATGGCCATTTGAAAAAAAAGGGGATTAGTGGAGTTATCAAAGTTGATTATGAGCAGATGACCTTGTCGATTGAGGTACAGATGCCCCAAGATGCATCAAACAAAGCTGTTCGAGACACACGGGGGCTTTCAGGTGGAGAGCGGTCTTTTTCAACTTTGTGCTTTGCATTAGCCCTTCATGAAATGACAGAGTCCCCATTTAGAGCAATGGATGAATTTGATGTCTTTATGGATGCAGTAAGCCGAAAAATTAGCATGGATACTCTGGTTGATTTTGCTGTTGCACAAGGGTCCCAGTGGATATTGATCACCCCACATGATACTAGCTTGGTGAAAGCAGGGAACAGGGTAAAGAAGATGCAAATGGCAGCTCCCCGTTCTTGA 3177 0.3935 MKRARSTGESSSSRVSPSLEAGVIKKLRLENFMCHSNHETVFGNHVNVITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIHVEIQNEGEDAFKPEMYGDVIIVERRISESTSSITLKDHQGKKVFSRKADLQEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISIEITTARGIVEELETAIKPIEKELNELQVKIKTMEHVEQISIQVQQLKKKLAWSWVYDADKKLEEQNVKIEKLKSRVPTCQAKIDKQLHQLEKLSENFSAKKAEIANMMTSQVKQMKETLSHSMSLAKKEVFELQRDCNRKTSSIQKMVQQLKRLELQMQDTHEQHLKNTQAEESDMEEKLKQLRDEFNDAKSKYDRLKEEEAMLMNSKNGQTDEIRRIDVKIQDHEKKYNEIMHNIRNLKNQQSNKITAFGGNKVINLLRIIERYHQRFKMPPIGPIGAHLKLRSGNKWAVAVEHAIGRMLNSFIVTDHKDFRLLKQCAKEANYDHLQIIIYDFSTPRLMIPEHMLPNTNHPSTLSILQCENHTVVNVLVDLGNVERQVLVSDYNTGKVVAFEERIQNLKEVFTLDGCKMFSRGPVQTTLPPNKRQRYGRLTSSVEADIEKLSHDASNEQKYANDYKRNKREAEVKLADLDEKMTSVKRLCTSAGRTLSSTKIALEEKTKEQAAERSSTPLSSVDEIVEEISEINKKIKEEQELFEALEQRRLEAVGKANDLNVKFDELCESANNELASLEKAESELMEIEREIDSAKKAKDHYDNVMKNKVLHDIKVAEEHYLEFAESREVNVEKASIICCENELATIGGCDGKTPEQISAQLESLNHTLRRESQRYSESIDDLRMLYAKKERKIAKRQQVYRALRQKLNACQSALKFRMRKFQANASNLKHQLSWKFNGHLKKKGISGVIKVDYEQMTLSIEVQMPQDASNKAVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISMDTLVDFAVAQGSQWILITPHDTSLVKAGNRVKKMQMAAPRS 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1217g00001 1058 Coils Coil 716 743 - -
Vivi1217g00001 1058 Coils Coil 881 901 - -
Vivi1217g00001 1058 Coils Coil 655 682 - -
Vivi1217g00001 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 1051 IPR027417 -
Vivi1217g00001 1058 Coils Coil 755 799 - -
Vivi1217g00001 1058 Coils Coil 211 231 - -
Vivi1217g00001 1058 Pfam RecF/RecN/SMC N terminal domain 24 1053 IPR003395 -
Vivi1217g00001 1058 Coils Coil 339 366 - -
Vivi1217g00001 1058 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 15 1057 - -
Vivi1217g00001 1058 Coils Coil 368 402 - -
Vivi1217g00001 1058 SUPERFAMILY Smc hinge domain 429 615 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vivi1217g00001 1058 Coils Coil 257 277 - -
Vivi1217g00001 1058 Coils Coil 285 305 - -
Vivi1217g00001 1058 Gene3D - 23 222 IPR027417 -
Vivi1217g00001 1058 Gene3D - 757 1055 IPR027417 -
Vivi1217g00001 1058 Coils Coil 424 444 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1217g00001 21 1058 Structural Maintenance of Chromosomes family AT5G07660 56.827 0.0 1166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1217g00001 K22804 - gmx:100816916 1530