Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi120g00015 ATGGCTAAAAAGAAACAGAAGGAGCCGCAACAAACTCCTAAAAACGACACCGTCTCATCCTCTTCCAGCGTTTTCGATGTTCTCTTCGGCAACGCGCCGGAACAGATAACCGGAGCTGCCGCCTCTCTTTTTTCCGATGACAACCCCTATAAGAGAAAACCACCACAACCTGCTCTAATTTCCGACGTTACCGATCACACTCCAAACTCCGAAAACGGCGACGTAGATGAAAAGAAGAGAAAGAGGAACAAAGAGAAAAGCCCCGTGCTTGATTCAAATTCTGCAATCAAAGTTTCAGAAAATTCAGAGAAGAAGAAAAAGAAGAAAAGTGGGTTGAACGAGAAGGAAGGGGAAGAGAAAGAGAAAGAGCATATTTTGGATGTAGAAACGATTGGGAAGGAGAAGAAGAAGAGGAAAAGGGATGAGGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATTGTTAAGGGAGGAGATAAGGATGAAAGGGAAGGGTTTGAGAATGAAAAAGTTGGGAGCAAGAGAAAAGTGCGTGATAATCCAGCTGATATGATGGTCTCAAAGAAAGGTTTTGATGATGAAGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCTCTTAAGGTGAAAAAGAAGACTTTGTTGAATGAGTTTAAGAAATTTGGTGAGGTTGAATCTGTTAGGATTCGCTCTGTTCCTTTGCAAGATACTAAAATACCTAGAAAGGGAGCCATCCTTGCGAAGAAGATCCATGAGTTGGCTGAAAGTGTCAATGCTTACATTGTTTTCAAAACTGAGGAATCTGCCCAGGCTTCATTGGCCCACAACATGACTGTGGTTGAAGGATTCCACATTCGTGTTGACAGGGCATGCCCGCCCCGCAAGAAACTTAAAGGGGATACTTCTCAGCTCTATGATAATAAGAGAACTGTTTTTGTGGGTAATCTCCCATTTGATGTAAAGGATGAAGAACTTTATCAGCTATTTGGTGGTATACCAAATCTAGAATCAAGTGTAGAAGCTATAAGAGTTGTTCGAGATCCTCATCTTAATGTGGGAAAGGGAATTGCTTATGTGCTATTTAAAACAAGGGAAGCTGCCAATTCTATTGTTAATAAACGATCCTTGAATCTTCGAGATCGAGCATTGAGACTTAGTCGTGCCAACACAAATGCTGCTACTACCCCATCTAAAAGGCCGGACTCTCCAGGGGCACGACTCACTCATGGCAAACCAAATGCTACTCCATCTAAAAGGCCATACACTCCAGCAGCACAAGCTCATAGGACCCCTGTGAAGAAGTTTTCAGCTGCTTCAAAGTCTCCTTCAAGCAGTAAAAACGGGTCCAACAGAAAAACTACTGCATCTTATCAGGGTCTGCGTGCAACCAAGTCTGATGTCTTCAAGAAAAGTCATGGTGGAGAAAAACCAAAAGTGCGCACACAGAAAAGACCAACAGTAGCTGCCAGAAAGGCTAAAGCAAAAGTGCAGCAGGAGGGTGGTACACCCAAACATGCAGGGTCAAAAGGTACACCAAAGAAAGCAGGGTCAAAAGGTACACCAAAACAAGCAGGGTCAAAACGCAAGTTTGATAGTCGAACTCCTGATAGCTCCGGACGAGTTATGAAAGCACAAAAGAAATGGTAG 1650 0.4315 MAKKKQKEPQQTPKNDTVSSSSSVFDVLFGNAPEQITGAAASLFSDDNPYKRKPPQPALISDVTDHTPNSENGDVDEKKRKRNKEKSPVLDSNSAIKVSENSEKKKKKKSGLNEKEGEEKEKEHILDVETIGKEKKKRKRDEVEKEWEEKKYGIVKGGDKDEREGFENEKVGSKRKVRDNPADMMVSKKGFDDEDKLLRTIFVGNLPLKVKKKTLLNEFKKFGEVESVRIRSVPLQDTKIPRKGAILAKKIHELAESVNAYIVFKTEESAQASLAHNMTVVEGFHIRVDRACPPRKKLKGDTSQLYDNKRTVFVGNLPFDVKDEELYQLFGGIPNLESSVEAIRVVRDPHLNVGKGIAYVLFKTREAANSIVNKRSLNLRDRALRLSRANTNAATTPSKRPDSPGARLTHGKPNATPSKRPYTPAAQAHRTPVKKFSAASKSPSSSKNGSNRKTTASYQGLRATKSDVFKKSHGGEKPKVRTQKRPTVAARKAKAKVQQEGGTPKHAGSKGTPKKAGSKGTPKQAGSKRKFDSRTPDSSGRVMKAQKKW 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi120g00015 549 SUPERFAMILY RNA-binding domain, RBD 304 409 IPR035979 GO:0003676
Vivi120g00015 549 MobiDBLite consensus disorder prediction 437 462 - -
Vivi120g00015 549 MobiDBLite consensus disorder prediction 1 22 - -
Vivi120g00015 549 MobiDBLite consensus disorder prediction 69 88 - -
Vivi120g00015 549 MobiDBLite consensus disorder prediction 525 549 - -
Vivi120g00015 549 SUPERFAMILY RNA-binding domain, RBD 191 299 IPR035979 GO:0003676
Vivi120g00015 549 Gene3D - 195 298 IPR012677 -
Vivi120g00015 549 CDD RRM1_RBM34 199 289 - -
Vivi120g00015 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 391 IPR000504 GO:0003723
Vivi120g00015 549 MobiDBLite consensus disorder prediction 40 128 - -
Vivi120g00015 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 383 IPR000504 GO:0003723
Vivi120g00015 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 233 IPR000504 GO:0003723
Vivi120g00015 549 SMART rrm1_1 311 387 IPR000504 GO:0003723
Vivi120g00015 549 SMART rrm1_1 200 289 IPR000504 GO:0003723
Vivi120g00015 549 MobiDBLite consensus disorder prediction 466 483 - -
Vivi120g00015 549 MobiDBLite consensus disorder prediction 388 549 - -
Vivi120g00015 549 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 290 459 - -
Vivi120g00015 549 Gene3D - 299 398 IPR012677 -
Vivi120g00015 549 MobiDBLite consensus disorder prediction 98 128 - -
Vivi120g00015 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 293 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi120g00015 179 389 Eukaryotic Initiation Factors Gene Family AT1G22760 27.602 9.42e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi120g00015 K14837 - gmx:100809622 555.829