Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1209g00020 ATGGAACCGGGCACCACCAGAATAGCTAGCCCGTCTGGGGCTGTGGTTAAGAATAGAACCTCTTCGGGGTGTTTGATTGTTAGAAAGAAAGGAGATGGTTTGGGTGGTGGTTCTTCGGGTTCGCGGAAACAGTATGAATCGAAGAAAGTGAGGAAAAAGGTTAAGGCGGAATCAAGTGATTCAGAATCAAGTGAGGAGTTACTTATGCCGCCTGCCAGGAGGCCCGGTCCTGAGACAATCCGAGTATGTAATAGTTTGAGTGCTCTTGAGCGAGGTGGTAATGTTGGTAGCGGGGAACTTAATAGGAAGAGGGAGAGAATGGAGCAAATTAGGCGTAACGGTGATGACATGGTTGAGGGGAATGGGTTGGAGAGGAGGGACAAGAAAGTTAAGTTGGAAGTGTTTGATTTTGATGAATATGATGGAGTGGGTGCGGAAAGGATGAGAAGGAGGCAATTTGATGGTGACGGGGTTAGTTTAGGTGGAGGAAGGTTTATGGGAACAATGCAGTCTGGTAGAGGTAGCATTGATAGGGAATTTGAAAGTGGTTCAAACAGACGCATTGTGGATAAGAGAAAAAGTGCATATCATGACAGAGCAAGTGGCTCGTATCTTGGAGATAGTGTTGACCATAGTAGGATAAAGGTGAAAAGGGAAGGAACTCAGCATCCTCCGCCCTTGTTGAAGGAGAAGTTTAACTCTGATGAGTCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTGATGGTTAATAAGAAGAAGACGAGTGGGTCAGTAGAACGCTATGATCATCGGAAACCAGTAGAAAGCAGACATAGTGGAAGGGCTGAGGGCACTTCTAAGAGGAATGTTCCAGTACAACCTTCATCACGCTTAGAAACAAAATCTGCCGAAAAACAGGGCTTACTTGTTAAGCCGGAGAAGAAACAGATAAAAAAATCACTCTCAAGCAAGGAGGACAGTAAGGGCGACGAGCAGGATTCCGAAAACAATGACACATCAATGAATCTGGAAGTAAAAAATATTAATGCTCACACATCTTCAAAAAAGATTACTTCTGAAAATGAACAGACTCCTGTACATGACAAGCTCCCAACAACAAAATCAAGTGAAGGGAAAATCAGGCGAGGTAGTGGCACAGAAAAGCAGAAACTAAGAGAACAAATACGGGAAATGCTTCTGAATAAAGGCTGGACCATAGACTATCGCCCACGAAGGAATAGAGACTATTTAGATGCAGTTTACATTAATCCCGGGGGAACAGCTTATTGGTCCATCATCAAGGCCTACGATGCACTTCAAAAGCAATTGATTGAGGATGACCAAGAGGCCAAGGCCAAAGGGGCGAGTTCTTCTTTTGCTCCTATCGCTGATGATGTGCTCAATCAATTGACAAGGAAAACTAGGAAGAAGATGGAGAAGGATTTAAAGATGAAGAAGAAGAAGCAAAGAGATGACGACAATGATAGTGGAAAAGAACGGCAGATTAAAAGAACTGCTGGGAAAAAGCATCATATGAATGACAATGATAGTGATAGCCATGAACAGAAGTTAAGCTCCTTTATCAAGCAAGGAGGTAAATCAGTGAAAACTAAATTGCCTGAAAATTCTGTTACGGGCGGTAGCTCTAAAAGCCAGAATGCTACAACTGATAAATCATTTCCTGAAAGTGATCCCAAGCTTCTACACGGAAGGAAAAGTAGAAAACATGGAAGGTGCACTCTATTAGTTCGTAGTTCTAACAAGGCATTGAATTCCGAATCTGATGACTTTGTTCCATATACGGGAAAGCGAACAGTGCTTTCCTGGTTAGTTGACTCGGGGGTAGTACAGGTAAGTCAAAAGGTTCAGTATCGCAGGAGGAAGCGAGTAATGCTGGAGGGATGGATCACAAGAGAAGGCGTTCACTGTGGCTGCTGTAGTAAGATCCTCACGGTTTCAAAGTTCGAGCTTCATGCAGGAAGCAAATTGCCACAACCATATCAAAACATATATTTAGATTCTGGAGTTTCTCTTCTACAATGCCAGATAGATGCGTGGGAAAAACAAGAGAATTCTGGGAAAATCAGTTTCCATTCAGTAGATGTTGATGGTAATGATCCAAATGATGATACCTGTGGTATATGTGGAGATGGTGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAATTGCTTGGATATACAGATGCTTCCTCCTGGGGATTGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGATTAGCCAGTGGAACTATTGACAAAGAAGATGATGCAACTGTATATGCCCTACACACTTGTGATTTGTGCGAGAAAAAATATCATGACTGCTGTACTAAGGATATGAGTGCCCTGCTTGCCAACTCCAATATGTCAGGGCATTCCTTTTGTGGAAAAAATTGCAAAGAGCTTTTTGAGCACTTGAAGAAATACCTTGGTACCAAGCATGAACTTGATGCAGGCTTTACATGGTGTCTTGTTCGTAGAACAGACGATGATTCCGAGGCAGCTAGTAGGGGAGTCACCCAAAGGGTGGAGTGCAACTCCAAGCTGGCTGTTGCACTGACTGTTATGGACGAATGCTTTTTACCTGTTGTTGATAGGAGGAGTGGGATCAATTTAATCCATAATAGTTTATATAACAGCGGGTCAAATTTCAGTCGGTTGAATTACACTGGCTTTTATACTGCTATTTTGGAGCGGGGCGATGAAATAATATCTGCAGCATCTATCAGATTCCATGGGACTAAGTTAGCAGAAATGCCATTCATTGGAACTCGCCATATATATAGACATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATTGAACATGCTCTTTGCTCTTTGAAGGTTGAGAAACTGGTCATTCCTGCAATTTCTGAACTTGTTCATACATGGACAACAGTGTTTGGCTTCACGCATCTTGAGGAATCACTCAGGCAAGAAATGAGGTCATTGAATATGTTGGTGTTCCCTGGTATTGATATGTTACAGAAGGTTCTAGTGGAGCAAGGAAAACTTGATGATGCCGAGCAATTTGAGAATGGTGGCGTGCTTTCTGTTAATCCCACTGTGGTCAATAGGTTAGATACGGATTCTTTGGCTTTGCAAGATCCCCATGAAAGTGAGGATGCTAGCTCCAATCCTGCCAATAAGATTAACACTGAATGCAGTGATGCTTCCCAAGATATAAGCAGTCAAGGTTTTACCGGCAGGACTGTATGCTCCAAATCTCATTCTGAAGAAAGATTATCTGATTCTGTTTCAGAAAATTGTGCTTCTCCTTCTAATTCTAGTCACGGCGTACTCGAAAAGAAAAATAAAATATCGACATCTTTCATCGGATCTACAAATGGCAAGTCTACAAATGGTCTTCCATCGGATCGCTCTGATTGCCATGAACTTCCAGCTTTGAGTCAAGCAACTGCATGTTCTGACCTAGGTACTGTAAAAAATCTGGTTGAACCTGTTTCTGACGGGAAACCCCATGCTTTAATCGATATGAATTGTGGTTTGCCGGGGCTTGCCCAAAATCCTGTGTTGGATTCTCAAGTGGTGGATAATGCTTTGTCTTTTAAAGAGTTTGATATGAATGCTGCCCAAGTTGAGGTTCTTGAAGCTGGTCTTTTAGTCAATCCATCTCAAGGGAACAATATCAAAGAGAAAAATGAAAATGTAGATTACTCTGGTTCTGTTCTTAATCATGCTTCCACTGATATGGATAGTGATTCACCAGAACTTGATCAAAATTCTGTGTTGGATTCTCAAGTGGCGGATAATGCTTTGTCTATTAAAGAGTTTGATATGAATGATGCCCCTGTGGAGGTTCTTGAAGCTGGTTCTTTAGTGAATTCATCTGAAGGGAACAATACCAAAGGGAATAATGAAAATGTTGATGACTCTGGTTCTGTTCTTAATCATGCTTTCACTGATATGAAAAGTGGTTCACCAGAACTTGACCGAAATCCCGTGTTGGATTCTCGAGTGGCGGACAATTCTATGTCTTTTAAAGAGGTTGATATGGATGATGCCCATGTTGAGGTTCTTGAAGCTGGTTCGTTAGTGAATTCATCTCAGGGGAACAATACCAAAGAGAATAATACAAGTGTAGATGTCTCTGATTCTGTTCTTAATCACACTTTCACTGATATGAATAGTGATTCTCCGGGGCTTGACGAAAATCTCATGTTGGATTCTCGAGCGGCAGACAATTCTTTGTCTTTTAAAGAGGTTGATGTGAATGATGCCCATGTCGGGGTTCTGGAAGCTGGTTCTTTAGTGAATTCATCTCAAGGGAACAATACCAACGAGGATAATAAAAATGTAGATGTCTTTGATTCCGCTCTTAATCACGCTTTCACTGATATGAATAGTGATTCTCCAGGGCTTGACCAAAATCCTGTGTTGGATTCGCAAGTGGTGGATAATTCTTTGTCTGTTAAAGAGATTGATATGAATGATGCCCGTGTCGAGGTTCCTGAAGCTGGTCCTTTAGTGAATTCAACTCAGGGGAACAATACCGATGAGAATAATGAAAATGTAGATGTCTCTGGCGCTGTTCTTAATCATGCCGGTGAGAGTTCCTTGCAGGTAAGATCTGATTTGATTAGTGAAATTGCATACGAGGGCGAAAAGAAATCACATTTAGACACAGAAGTTGCTTCAAATGAAATGCACTTTGATGAAACTGGCCTAAATGCTTCTGGTGGTAGTACTGAGACGGATCGAGCATTGATGAATGGTTGA 4764 0.4198 MEPGTTRIASPSGAVVKNRTSSGCLIVRKKGDGLGGGSSGSRKQYESKKVRKKVKAESSDSESSEELLMPPARRPGPETIRVCNSLSALERGGNVGSGELNRKRERMEQIRRNGDDMVEGNGLERRDKKVKLEVFDFDEYDGVGAERMRRRQFDGDGVSLGGGRFMGTMQSGRGSIDREFESGSNRRIVDKRKSAYHDRASGSYLGDSVDHSRIKVKREGTQHPPPLLKEKFNSDESIRVQGKNGVLKVMVNKKKTSGSVERYDHRKPVESRHSGRAEGTSKRNVPVQPSSRLETKSAEKQGLLVKPEKKQIKKSLSSKEDSKGDEQDSENNDTSMNLEVKNINAHTSSKKITSENEQTPVHDKLPTTKSSEGKIRRGSGTEKQKLREQIREMLLNKGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLIEDDQEAKAKGASSSFAPIADDVLNQLTRKTRKKMEKDLKMKKKKQRDDDNDSGKERQIKRTAGKKHHMNDNDSDSHEQKLSSFIKQGGKSVKTKLPENSVTGGSSKSQNATTDKSFPESDPKLLHGRKSRKHGRCTLLVRSSNKALNSESDDFVPYTGKRTVLSWLVDSGVVQVSQKVQYRRRKRVMLEGWITREGVHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWEKQENSGKISFHSVDVDGNDPNDDTCGICGDGGDLICCDGCPSTFHQNCLDIQMLPPGDWHCPNCTCKFCGLASGTIDKEDDATVYALHTCDLCEKKYHDCCTKDMSALLANSNMSGHSFCGKNCKELFEHLKKYLGTKHELDAGFTWCLVRRTDDDSEAASRGVTQRVECNSKLAVALTVMDECFLPVVDRRSGINLIHNSLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIEHALCSLKVEKLVIPAISELVHTWTTVFGFTHLEESLRQEMRSLNMLVFPGIDMLQKVLVEQGKLDDAEQFENGGVLSVNPTVVNRLDTDSLALQDPHESEDASSNPANKINTECSDASQDISSQGFTGRTVCSKSHSEERLSDSVSENCASPSNSSHGVLEKKNKISTSFIGSTNGKSTNGLPSDRSDCHELPALSQATACSDLGTVKNLVEPVSDGKPHALIDMNCGLPGLAQNPVLDSQVVDNALSFKEFDMNAAQVEVLEAGLLVNPSQGNNIKEKNENVDYSGSVLNHASTDMDSDSPELDQNSVLDSQVADNALSIKEFDMNDAPVEVLEAGSLVNSSEGNNTKGNNENVDDSGSVLNHAFTDMKSGSPELDRNPVLDSRVADNSMSFKEVDMDDAHVEVLEAGSLVNSSQGNNTKENNTSVDVSDSVLNHTFTDMNSDSPGLDENLMLDSRAADNSLSFKEVDVNDAHVGVLEAGSLVNSSQGNNTNEDNKNVDVFDSALNHAFTDMNSDSPGLDQNPVLDSQVVDNSLSVKEIDMNDARVEVPEAGPLVNSTQGNNTDENNENVDVSGAVLNHAGESSLQVRSDLISEIAYEGEKKSHLDTEVASNEMHFDETGLNASGGSTETDRALMNG 1587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 1 79 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 1504 1519 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 519 555 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 210 237 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 331 366 - -
Vivi1209g00020 1587 SUPERFAMILY FYVE/PHD zinc finger 696 752 IPR011011 -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 469 574 - -
Vivi1209g00020 1587 PANTHER PHD FINGER PROTEIN 12 359 1114 IPR042163 GO:0003714|GO:0045892
Vivi1209g00020 1587 SMART PHD_3 706 747 IPR001965 -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 179 198 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 1093 1111 - -
Vivi1209g00020 1587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 808 IPR013083 -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 255 279 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 299 330 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 1567 1587 - -
Vivi1209g00020 1587 Pfam PHD-finger 707 749 IPR019787 -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 153 385 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 281 297 - -
Vivi1209g00020 1587 Pfam Tify domain binding domain 629 679 IPR032308 -
Vivi1209g00020 1587 ProSitePatterns Zinc finger PHD-type signature. 707 746 IPR019786 -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 367 385 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 1046 1078 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 1043 1078 - -
Vivi1209g00020 1587 ProSiteProfiles Zinc finger PHD-type profile. 704 749 IPR019787 -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 479 518 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 1090 1111 - -
Vivi1209g00020 1587 MobiDBLite consensus disorder prediction 1500 1519 - -
Vivi1209g00020 1587 CDD PHD2_CHD_II 707 746 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1209g00020 1 1008 PHD Transcription Factor Family AT4G14920 49.660 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi1209g00020 TDBD 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1209g00020 - - mtr:25485216 2363.19