Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1209g00017 ATGAATGTTGCTGCAAGTTTTGAGGCACAAGATTCTGAGTTTATAGAAGTTGATCCTACTGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTATATAGAGCATTTGATGAGTATGATGGAATAGAAGTAGCATGGAATCAAGTAAAGCTTTATGATTTTTTGAAAAATCCTCAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTCAAGACATTGAAGCATAAGAACATCATGAAGTTTTATACTTCTTGGGTTGATACTACTAATAGACACATTAATTTTGTTACTGAGATGTTCACATCCGGTACTCTAAGACAATACAGACTCAAACATAAAAGAGTTAACATAAGAGCTGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGTCTCCTCTATCTCCATAGCCAGGATCCTCCTGTAATCCATAGAGATCTCAAATGCGACAACATTTTCATCAATGGTAACCAAGGAGAAGTCAAAATCGGTGATCTTGGCCTCGCTGCAATTCTCCGCAGATCAAATGCCGTTCACTGCGTTGGAACACCCGAGTTTATGGCTCCGGAAGTGTATGAAGAGCATTACAACGAATTGGTTGACATATACGCTTTCGGAATGTGTATATTGGAGATGGTTACCTTTGAATATCCTTATAGCGAATGCAACCATCCAGCTCAAATTTACAAAAAGGGGAAAATGCCAGAATCATTTTACAAAGTAAATGATCAAGAGGTTAAGCAGTTTGTAGAGAAATGTCTGGCAACTGTGTCCCTTAGGCTTTCAGCTAGGGAACTCTTAGATGACCCTTTTCTCCAAATTGATGATTATGGATCTGACTTGAAAGAAGTTCAGTATCAAAGAGGTTGCTATGAAGAAACACCAACGATTCGACAAACTGTGAATGGAAGTTATAGCAATAACTTAATGAGTTTGTACACTGATAATTCTGGTGGTTATCAAAATGATTTTGATCTCTTTGATTGTGAAGAGGATGATAATTTGGATAAAGTTGATACCTCGATCAAAGGTAGGAGAAGAGATGATGGCATCTTTCTTAGAATCAGAATACCAGATAAAGAAGGTCGAGTTCGAAACATCTACTTCCCGTTCGACACGGAGACTGATACTGCATTGAGTGTTGCGTATGAAATGGTAGCGGAGCTTGACATAACTGACCAAAATTTAACAAAATTAGCGAATATGATAGATAATGAAATTGCAAATTTGGTACCGGGATGGAAAATGGGACCAAGAATAGATGAAGTTTCAGAAGCTTCAAGTGCAAATTTCTGTCTCAACTGTGCTGCAAACAATACCTTAGTTGATTACGTCTCATCGAATAATCCATGTGCCAAGAATCTTCAATTTTTCCATTGTTCTAAAAACGGATGTGCTGCGGTTCACGGCCGATTTGAGGAGATTACGTATCAATACGAAGGGTCTGCAAACACTGCTACAGAAGCTGAACCACCAAGTCAATCCAATGACATTCATTATGCTGATATCTGGGGTCAGCGAGACGAACAACAGTCAAATCATGAAGGATTGAAAGACATTCATTGCGACGATTCTCATGAGAAATCTAAACTATCACTCATAAAGGAGGATGAAGAGGAGAATAGTGTTGATGCAGATGACCAAGTTTATCTTAATACCAAAAAGCCTCCTTCTAGCCCTGCAGCTTCAGAATGTTCGTTATTCTTGGACTACGAAAATGATATAAGGCATGAACTCCGATGGCTCAAAGCAAAGTACCAAATGCATTTAAGAGATCTTAGAGGCCATCAACTAGGTAGTAATACTAAACCTAAATCTACTTGCCCATCTCCTGAAACTATAAAACTAGAGCATGGAAAAAATGGATTTCTGAGACCACCAGCTAAATTACAAAACAATAACTCATTATCGATAGACGTTGATGCTGCAAAGTGCAACACTCTGAATGACCAAATTATTCCAAGTATTGCTTGTGATACAAGTCAGCTTAACAATTCTCAACAAATGGTCACGGCCAAGGATTTCTTTGCAGGAGCATTGCTTCCAAACTCGCTTCAAAGGGCAACCTCGCTTCCAGTCGATGCAGTTGATGTCTAG 2115 0.3872 MNVAASFEAQDSEFIEVDPTGRYGRYNEILGKGASKTVYRAFDEYDGIEVAWNQVKLYDFLKNPQDLERLYCEIHLLKTLKHKNIMKFYTSWVDTTNRHINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLLYLHSQDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRRSNAVHCVGTPEFMAPEVYEEHYNELVDIYAFGMCILEMVTFEYPYSECNHPAQIYKKGKMPESFYKVNDQEVKQFVEKCLATVSLRLSARELLDDPFLQIDDYGSDLKEVQYQRGCYEETPTIRQTVNGSYSNNLMSLYTDNSGGYQNDFDLFDCEEDDNLDKVDTSIKGRRRDDGIFLRIRIPDKEGRVRNIYFPFDTETDTALSVAYEMVAELDITDQNLTKLANMIDNEIANLVPGWKMGPRIDEVSEASSANFCLNCAANNTLVDYVSSNNPCAKNLQFFHCSKNGCAAVHGRFEEITYQYEGSANTATEAEPPSQSNDIHYADIWGQRDEQQSNHEGLKDIHCDDSHEKSKLSLIKEDEEENSVDADDQVYLNTKKPPSSPAASECSLFLDYENDIRHELRWLKAKYQMHLRDLRGHQLGSNTKPKSTCPSPETIKLEHGKNGFLRPPAKLQNNNSLSIDVDAAKCNTLNDQIIPSIACDTSQLNNSQQMVTAKDFFAGALLPNSLQRATSLPVDAVDV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1209g00017 704 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Vivi1209g00017 704 MobiDBLite consensus disorder prediction 552 566 - -
Vivi1209g00017 704 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vivi1209g00017 704 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 612 - -
Vivi1209g00017 704 FunFam probable serine/threonine-protein kinase WNK9 107 283 - -
Vivi1209g00017 704 MobiDBLite consensus disorder prediction 534 569 - -
Vivi1209g00017 704 ProSiteProfiles Protein kinase domain profile. 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1209g00017 704 SMART serkin_6 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1209g00017 704 Pfam Protein kinase domain 27 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1209g00017 704 CDD STKc_WNK 22 278 - -
Vivi1209g00017 704 Gene3D Transferase(Phosphotransferase) domain 1 107 283 - -
Vivi1209g00017 704 SUPERFAMILY Protein kinase-like (PK-like) 27 279 IPR011009 -
Vivi1209g00017 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1209g00017 1 625 MAP Kinase Kinase Kinase AT3G22420 50.522 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vivi1209g00017 Pkinase 6.3e-50 CL0016