Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1207g00012 ATGGCTAGAAAAAAGTTGAAACTTGCTTTCATTGAGAATAATACCGCAAGAAAATCAGCATACAAGAATAGGAAGAAGGGTTTAGTCAAGAAGGTTGATCAACTAGCAACCCTTTGCGGTATCGAGGCTTGTGCAATAATTTATGGCCCCGACGATCATCATCCTGTAGTCTGGCCATCGCCGTCCGGAGTCCAAAATGTGCTTTCGAAATTCATGACATGGCCTGAGTTTGAACAAAGAAAAAATATGGTGAATCAAGATAGTTTTCTGAGTCAAAGGATTTCAAAGGCTCAAATGAAACTTAAAACGCAATCGAGAGACAACCGAGAGAAAGAGACGACCATGCTGATGTTTCAATGCCTCGATGCTGGAAAGGTCGTACAGAACGATATGTCGGGGGCTGGTTTAAATGATCTTGCCTGGACGATTGATCAGAACTTGAAAAAGATTGATAGAAGGTTGGAATCAGGTGATAACGAAATGAATATTCACCGAAATCAATGTGAAAATGAAATCATGACGGCTCAAAGTCATGACCAACTCCAAATGGAACAGCCACTGCTACTACCACTGCCGCCGCCGCTACCACCAACCACGGCCAATAATGGTGAAATTGCAATGATGAGTGATGGCCATCTCCAAACGGCACCACCACTGCCACTCCTACCACCACCACCACCACCAACCGCGCCTAATAATGATGAAATGGCATTGATGGGTCATGGCCATGTTGGGATGGCTACGAATAACAATGACATGATGTTTATGGACATGTTGATGAATGATGATGAATGGTGGTGA 801 0.437 MARKKLKLAFIENNTARKSAYKNRKKGLVKKVDQLATLCGIEACAIIYGPDDHHPVVWPSPSGVQNVLSKFMTWPEFEQRKNMVNQDSFLSQRISKAQMKLKTQSRDNREKETTMLMFQCLDAGKVVQNDMSGAGLNDLAWTIDQNLKKIDRRLESGDNEMNIHRNQCENEIMTAQSHDQLQMEQPLLLPLPPPLPPTTANNGEIAMMSDGHLQTAPPLPLLPPPPPPTAPNNDEMALMGHGHVGMATNNNDMMFMDMLMNDDEWW 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1207g00012 266 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vivi1207g00012 266 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi1207g00012 266 PANTHER MADS BOX PROTEIN 3 151 - -
Vivi1207g00012 266 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Vivi1207g00012 266 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi1207g00012 266 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi1207g00012 266 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1207g00012 266 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1207g00012 1 155 Type I MADS-box Gene Family AT5G48670 54.839 3.61e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1207g00012 SRF-TF 5.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1207g00012 - - vvo:131658560 427.557