Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1204g00002 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGAAAGAAGATCAAAAGGGAAGGAGATCATCATCATCATCATGTTTCAAATTCTTCACCTCAGATGGGAAGAAGACATATGTTAGGTCCACCAGGAACCCTAAATACTATAACCCCTTGTGCGGCATGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCTTTTTCTCCCTATTTCTCCCCTCATGAGCCTCAGAAATTTGCTTCTGTTCACAAAGTTTTTGGTGCCAGCAATGTCTCCAAGATGCTAATGGAGGTAGCAGAATGTTCTAGAGCAGATGCAGCAAATAGTCTTGTTTATGAAGCAAATGTGAGACTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCTGCATTGCAACAACAGGTTCAATCTTTACAAAGTGAACTCAATGTATTAAGAGGTGAAATACTTAAATACAAACTAAGAGAAGCAGCTAACATCAACATGAATACTATGAACAATATGAATATGAACATGAATATGCTACCAGCTTCTTCTCATCATGTTCCAATGCTCCCTTCTAATTCTGTTGCTGTTTCAATTGCTGCTCCACCGCCACCGCCGCCGCCACCTCCTCCTCTTCCTCCTACAAGTTCCAATTCCTCTTCTTCCATATACTATCAGAGGGATCCAAACAACTATACCAGAATTTCAAGTGATGATAATATTTCTTATTTTGGTTAA 726 0.3953 MSRERERFDEIGKKIKREGDHHHHHVSNSSPQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAECSRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQSELNVLRGEILKYKLREAANINMNTMNNMNMNMNMLPASSHHVPMLPSNSVAVSIAAPPPPPPPPPPLPPTSSNSSSSIYYQRDPNNYTRISSDDNISYFG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1204g00002 241 ProSiteProfiles LOB domain profile. 49 150 IPR004883 -
Vivi1204g00002 241 Pfam Lateral organ boundaries (LOB) domain 50 146 IPR004883 -
Vivi1204g00002 241 MobiDBLite consensus disorder prediction 13 38 - -
Vivi1204g00002 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 46 180 - -
Vivi1204g00002 241 MobiDBLite consensus disorder prediction 13 27 - -
Vivi1204g00002 241 MobiDBLite consensus disorder prediction 194 241 - -
Vivi1204g00002 241 MobiDBLite consensus disorder prediction 213 241 - -
Vivi1204g00002 241 MobiDBLite consensus disorder prediction 194 212 - -
Vivi1204g00002 241 Coils Coil 129 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1204g00002 5 170 AS2 family AT2G30340 65.476 3.53e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi1204g00002 LOB 2.5e-39 No_clan