Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1204g00001 ATGAATCCTCCACCGCACTTCATCTTCTCCGCACTACATTTACTCTTCATTTTCCTCACTTCCTCCTCCGCCTCCCAACTCGAGCTCCGATCTCTACTAGAATTCAAAAAAGGCATAACCTCAGATCTAGTTCTCAACTCATGGAACCCTCATTCCATCACCAACTTCGACGTTTGTCCCCCCACATGGGAAGGAATCTCCTGCGACGAACTCACCGGAAACGTCACCGGAATTGTACTCGAGAATCACAATCTCACCGGAGAGATTAAGTTTCATACTCTCCTCGACCTTAAAATGCTCAAAAACCTTAGTCTCGCCGGGAATCAGTTCACCGGCAGGTTACCCCCTTCTTTAGGTATAATTACCTCTCTCCAGCATTTGGATCTTTCGAGTAACAAATTCTACGGTCCAATCCCGGCACGGATCAACGATCTTTGGGGTCTCAATTATCTCAATTTATCAAATAACCAATTCAAAGGTGGATTTCCTACTGGTCTCAACAATCTTCAGCAACTTAGGGTTCTCGATTTGCACTCTAATGAACTCTGGGCTGACATTGGTGACCTTCTTCCCACTCTTCGGAACCTCGAGTTTCTAGATTTGAGTCAGAATCAGTTCTATGGTGGACTTTCCATTACTCTTGAGAATGTTTCCTCTTTGGCTAATACTGTTCGGTTTTTGAACTTGAGTCACAATAAATTGAACGGGAACTTCTTCCGAAACGACTCAATTGAATTGTTTAGGAACTTGCAAGCTTTGGATTTGAGTGATAACATGATTAGAGGGGAGCTTCCTTCTTTTGTTTCGTTGCGGGGACTTCGAGTTCTGAGACTCGCTCGAAATCTTTTCTTTGGGGCTGTGCCGGAGGACTTGTTGTTGACTTCAATGTCATTGGAAGAATTGAATCTCAGTTCCAATGGATTTACTGGCTCAATTGCTGTAATTAACTCTACCACTTTAAATGTTTTGGATCTTTCGTCGAATAGTTTATCAGGACCATTGCCAACTTCTTTGAAAAGCTGTACAGTCATAGATTTGAGCAGGAATATGTTTTCTGGCGACATTTCTGTAATAGAGAACTGGGAAGCCACTATGGAGGTTATTGATTTGAGTTCAAACAAGCTGTCAGGGTCCTTGCCTTCTATTATAGAATATTCAAAATTGTCTTCCATTGACTTAAGTTTGAATGAACTTAACGGATCCATTCCAGTTAGTTTAGTTATTTCACCATCACTGACAAGACTCAATCTTTCTGGAAATCAGTTTACAGGACCACTTTTGCTTCAAGGTTCAGGGGCTAGTGAATTACTACTCACTTCTCCTTTTCTGCCAGTGGAATATTTTGATGTATCAAACAACTCTTTAGAAGGTGTCTTGCCTTCTGATATAGGTAGGATGGCTAAGCTCAAACTGCTGAATCTGGCAAGGAATGGCTTTTCTGGACAACTTCCAAATGAATTGAGCAAACTTATTGATTTAGTTTCCCTCGATTTGTCTAACAACAAATTTATTGGCAATATTCCTGACAAGCTTTCATCTAGCTTGAATGTATTTAATGTGTCCAACAATGATCTATCTGGCCTTGTTCCCGAAAATTTGCGGCGGTTTCCTACGTCATCCTTTTACCCTGGAAATGAAAAGCTAAAGTTATCAAAGAATTCTCCTGAACATTCTTCACTGCCAGGCAATATTTCAAATAAACATCACAGTTCAAAGGGTAATATCAGGATAGCAATTATCCTTGCTTCTGTGGGTGCTGCTGTGATGATTGCTTTTGTTTTATTGGCTTATCATCGAACACAAGCAAAAGAGTTTCACGGGAGAAGTGAGTTTGGTGGTCAAACTACTGGAGGACTTTCAAGGGCTTCTCTCTTCAAGTTCCATTCAAATGCTCTTCCCCCATCATCTTCGGCGAGCTTTTCAAATGATCACTTGTTGATATCCAATTCAAGGTCACTTTCTGGACAGCAGTCAGAGTTTATTACTGAAATTTCTGAACATGGCTTGTCTCAGGGAGTAGCAACCAGTTCAGCACCGGTAATTCCTAATTTGATGGATAACCCTCCTATGTCATCTGGAAGGAAGTCTTCTCCCAGTTCCCCATTGTCGTCCTCACCCCGTTTTATAGAGGCTTGTGAAAAGCCTGTGATGTTGGATGTTTACTCACCAGATCGACTGGCTGGGGAACTGTTTTTTCTGGATTCTTCACTAGCATTCACTGCAGAGGAGTTATCTCGAGCTCCGGCTGAAGTTCTTGGCAGAAGTAGCCACGGCACTCTGTACAAAGCTACCCTGGACAGTGGTCATATGTTGACTGTAAAATGGTTAAGGGTGGGGTTGGTCAAACATAAAAAGGAGTTTGCTAGAGAAGTTAAAAGGATTGGTTCTATGAGGCATCCCAACATCGTGCCGTTACGAGCATCCTATTGGGGGCCTAGGGAACAGGAGAGGCTTCTGTTAGCTGACTATATTCATGGAGACAACTTGGCCCTCCATCTCTACGAGACCACACCCCGGAGATACTCACCATTGTCATTCAGTCAGAGAATAAAAGTTGCGGTTGATGTTGCAAGATGTCTTTTATACCTTCACGACCGAGGGCTTCCTCACGGAAATCTGAAGCCGACAAATATTCTGTTAGCAGGCCCTGAGTACGGTGCCCGTCTTACTGACTACGGTCTGCATCGCCTCATGACGCCAGCTGGAGTTGCAGAGCAGATACTAAATCTAGGAGCACTCGGATACCGTGCTCCAGAACTTGCTTCTGCATCCAAACCACTCCCATCTTTTAAGGCCGATATCTACGCACTTGGTGTGATCCTAATGGAATTATTAACGAGAAAAAGTGCAGGCGACATAATATCGGGACAATCAGGTGCTGTTGATCTTACAGATTGGGTTAGGCTGTGTGAAAGAGAAGGAAGGGTAATGGACTGTATAGACAGAGACATTGCAGGTGGTGAAGAATCCTCTAAAGAGATGGACCAACTGCTAGCAACATCTCTCAGGTGTATTCTCCCTGTACATGAAAGGCCTAACATCAGACAAGTTTTTGAAGATCTCTGTTCTATACCATCGGCTTGA 3084 0.4309 MNPPPHFIFSALHLLFIFLTSSSASQLELRSLLEFKKGITSDLVLNSWNPHSITNFDVCPPTWEGISCDELTGNVTGIVLENHNLTGEIKFHTLLDLKMLKNLSLAGNQFTGRLPPSLGIITSLQHLDLSSNKFYGPIPARINDLWGLNYLNLSNNQFKGGFPTGLNNLQQLRVLDLHSNELWADIGDLLPTLRNLEFLDLSQNQFYGGLSITLENVSSLANTVRFLNLSHNKLNGNFFRNDSIELFRNLQALDLSDNMIRGELPSFVSLRGLRVLRLARNLFFGAVPEDLLLTSMSLEELNLSSNGFTGSIAVINSTTLNVLDLSSNSLSGPLPTSLKSCTVIDLSRNMFSGDISVIENWEATMEVIDLSSNKLSGSLPSIIEYSKLSSIDLSLNELNGSIPVSLVISPSLTRLNLSGNQFTGPLLLQGSGASELLLTSPFLPVEYFDVSNNSLEGVLPSDIGRMAKLKLLNLARNGFSGQLPNELSKLIDLVSLDLSNNKFIGNIPDKLSSSLNVFNVSNNDLSGLVPENLRRFPTSSFYPGNEKLKLSKNSPEHSSLPGNISNKHHSSKGNIRIAIILASVGAAVMIAFVLLAYHRTQAKEFHGRSEFGGQTTGGLSRASLFKFHSNALPPSSSASFSNDHLLISNSRSLSGQQSEFITEISEHGLSQGVATSSAPVIPNLMDNPPMSSGRKSSPSSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATLDSGHMLTVKWLRVGLVKHKKEFAREVKRIGSMRHPNIVPLRASYWGPREQERLLLADYIHGDNLALHLYETTPRRYSPLSFSQRIKVAVDVARCLLYLHDRGLPHGNLKPTNILLAGPEYGARLTDYGLHRLMTPAGVAEQILNLGALGYRAPELASASKPLPSFKADIYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESSKEMDQLLATSLRCILPVHERPNIRQVFEDLCSIPSA 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1204g00001 1027 MobiDBLite consensus disorder prediction 678 705 - -
Vivi1204g00001 1027 Pfam Leucine Rich repeat 295 312 IPR001611 GO:0005515
Vivi1204g00001 1027 Pfam Leucine Rich repeat 409 424 IPR001611 GO:0005515
Vivi1204g00001 1027 MobiDBLite consensus disorder prediction 689 705 - -
Vivi1204g00001 1027 MobiDBLite consensus disorder prediction 554 569 - -
Vivi1204g00001 1027 ProSiteProfiles Protein kinase domain profile. 746 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1204g00001 1027 Gene3D Ribonuclease Inhibitor 27 186 IPR032675 -
Vivi1204g00001 1027 Gene3D Ribonuclease Inhibitor 295 433 IPR032675 -
Vivi1204g00001 1027 SUPERFAMILY L domain-like 48 355 - -
Vivi1204g00001 1027 Gene3D Ribonuclease Inhibitor 446 548 IPR032675 -
Vivi1204g00001 1027 Pfam Leucine rich repeat N-terminal domain 28 69 IPR013210 -
Vivi1204g00001 1027 FunFam Nuclear pore complex protein NUP107 25 188 - -
Vivi1204g00001 1027 FunFam Leucine-rich repeat receptor-like protein kinase 731 823 - -
Vivi1204g00001 1027 PANTHER OS07G0626500 PROTEIN 382 1025 - -
Vivi1204g00001 1027 SUPERFAMILY L domain-like 338 533 - -
Vivi1204g00001 1027 FunFam Pollen receptor-like kinase 1 824 1027 - -
Vivi1204g00001 1027 MobiDBLite consensus disorder prediction 546 569 - -
Vivi1204g00001 1027 Gene3D Transferase(Phosphotransferase) domain 1 825 1027 - -
Vivi1204g00001 1027 ProSiteProfiles Leucine-rich repeat profile. 249 271 IPR001611 GO:0005515
Vivi1204g00001 1027 Pfam Protein kinase domain 750 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1204g00001 1027 SUPERFAMILY Protein kinase-like (PK-like) 749 1021 IPR011009 -
Vivi1204g00001 1027 Gene3D Phosphorylase Kinase; domain 1 727 823 - -
Vivi1204g00001 1027 FunFam Leucine-rich repeat receptor protein kinase EMS1 439 532 - -
Vivi1204g00001 1027 Gene3D Ribonuclease Inhibitor 187 294 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1204g00001 11 1026 Receptor kinase-like Gene Family AT5G01890 29.810 1.05e-86 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi1204g00001 Pkinase 8.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1204g00001 - - gmx:100802768 1582.77