Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi11g00117 ATGGTGTCTGAGGCAAGCAAGAAGAAGGCCGCCCAGAAGAAGGCCGCCGCTGCCGCTAAGAGAGGAGGCAAGGTTGCTGCTTCAGCGAAAACGGCTTCGGTGAAAGCGGTTGAGAGTGTTGCTAACGGAATTGGGGATATTCAGATATCTGATCGGACATGCACCGGCGTTCTCTGTTCTCATCCTCTTTCCAGAGATATTAGGATAGAATCTCTGTCAGTTACCTTCCATGGACATGATCTTATAGTTGATTCTGAATTGGAGCTAAATTATGGCAGACGTTATGGTTTGCTTGGATTAAATGGTTGTGGGAAATCTACCCTACTGACAGCAATAGGGTTACGTGAACTTCCTATTCCTGAGCACATGGATATTTATCACCTTAGCCGGGAAATTGAAGCATCTGACATGTCTGCATTGGAGGCTGTCATTAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAATTCTGGGTGCACAGGATGATGGCGGTGGTGAAGCACTTGAACGAGTTTATGAGCGACTGGAAGCTATGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAAGAAATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGATGGAGAATGAGGATTGCTTTAGCACGAGCCCTATTTATGAACCCAACCATTCTTCTTCTTGATGAACCAACCAATCACCTTGATTTGGAAGCATGTGTGTGGCTGGAGGAGAATTTGAAGAAATTTGACCGAATTCTGGTTGTGATTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAGAGCAAAAAGCTGAAGTTCTATACTGGTAATTATGATCAATATGTTCAGACTCGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTATAGATGGGAGCAGGAGCAGATCGCCTCAATGAAGGAATACATTGCTCGATTTGGCCATGGATCAGCAAAACTAGCTCGGCAAGCTCAGAGTAAAGAGAAGACTCTTGCAAAAATGGAGCGCGGTGGACTTACAGAGAAGGTGGTAAGAGACAAAATTTTAGTTTTTCGCTTCGTTGATGTGGGAAAACTCCCCCCACCTGTTCTCCAGTTTGTGGAGGTGACATTTGGTTACACTCCGGATAATCTCATCTACAAGAGCATTGACTTTGGGGTCGACTTAGACTCCAGAATTGCTTTGGTTGGACCCAATGGAGCTGGAAAGAGCACATTCCTTAAACTCATAACTGGTGATTTGGTTCCCTTAGATGGCATGGTTCGTCGCCATAACCACCTTCGCATTGCACAATTTCACCAGCACTTGACTGAAAAGCTAGACCTGGAACTGTCTGCCCTTCAATTTATGATTAAAGAGTACCCTGGAAATGAAGAAGAGAGGATGAGAGCAGCCATTGGGAAATTCGGATTGTCAGGTAAAGCACAGGTAATGCCTATGAGAAACTTATCCGACGGACAGAGGAGTCGCGTGATCTTTGCGTGGTTAGCCTATAGACAACCCCACTTGCTCCTCTTAGATGAGCCAACCAATCATTTAGATATCGAGACAATCGACTCTTTAGCCGAGGCACTGAATGAATGGGATGGTGGCCTGGTACTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCTCATGAGATATGGGTCTGTGCTGATCAAACAGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGCAGCATTTAAAGGCAAAGGCAGGTTTAGCTGACTGA 1782 0.4495 MVSEASKKKAAQKKAAAAAKRGGKVAASAKTASVKAVESVANGIGDIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGLRELPIPEHMDIYHLSREIEASDMSALEAVISCDEERLRLEKEAEILGAQDDGGGEALERVYERLEAMDASTAEKRAAEILFGLGFNKEMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQSKKLKFYTGNYDQYVQTRAELEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKSIDFGVDLDSRIALVGPNGAGKSTFLKLITGDLVPLDGMVRRHNHLRIAQFHQHLTEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMRNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCADQTVTRWEGDIMDFKQHLKAKAGLAD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi11g00117 593 Gene3D - 67 331 IPR027417 -
Vivi11g00117 593 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 39 588 - -
Vivi11g00117 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 593 IPR003439 GO:0005524
Vivi11g00117 593 CDD ABCF_EF-3 67 284 - -
Vivi11g00117 593 CDD ABCF_EF-3 378 570 - -
Vivi11g00117 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 309 IPR027417 -
Vivi11g00117 593 SMART AAA_5 91 293 IPR003593 GO:0016887
Vivi11g00117 593 SMART AAA_5 403 570 IPR003593 GO:0016887
Vivi11g00117 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 572 IPR027417 -
Vivi11g00117 593 Pfam ABC transporter 395 525 IPR003439 GO:0005524
Vivi11g00117 593 Pfam ABC transporter 85 239 IPR003439 GO:0005524
Vivi11g00117 593 Gene3D - 354 591 IPR027417 -
Vivi11g00117 593 Coils Coil 581 593 - -
Vivi11g00117 593 FunFam ATP-binding cassette sub-family F member 3 338 592 - -
Vivi11g00117 593 Coils Coil 285 305 - -
Vivi11g00117 593 Pfam ABC transporter 278 350 IPR032781 -
Vivi11g00117 593 FunFam Abc transporter f family member 1 67 331 - -
Vivi11g00117 593 ProSitePatterns ABC transporters family signature. 211 225 IPR017871 GO:0005524|GO:0016887
Vivi11g00117 593 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 67 307 IPR003439 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi11g00117 378 571 Calmodulin-binding Proteins AT2G36910 26.754 1.31e-08 56.2