Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi11g00093 ATGGAGCATTTGAAGAAATCTCCATCTTCATCATCATCTTCATCAATGAGGCCATCATTTCCAAGAGATCCTCGAGGCTCCTTAGAAGTGTTCAATCCAACCAGCAACTCCAGCTCGCCGGTACGCTCGCCGTCAAACCTGAAAAATTGGACGGAAACGAAAGAAGAGCAGCGCAAGGAAATCTCCGAGCTACATACTGAATTCTCCGATGAAATCACCAACACTTCATGGATGGCAATCAAGGAAGGAGAAACCGGTGCGGCAGTACAGAGAGCCGCCGAGTGGGGATTGGTGCTCACAACAGATGCTGAAACCGGGAAACCTCAAGGAGTGGCAGTTCGGCACTCCGGTGGAGACGAGCCGAATGTCAAACTTGAAACCAAAAGAAACTCCAATAACTCTGTTAGAACTTCCGGTGAGTCTTCCGACGGCGGTGATCCCCGCGGGTTTCCGAGAGTTTCGGAGGATTTGAAAGACGCGTTATCGGCTTTTCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTTTGTATGCAAGTGCGGGTTTCTTCAAAATGACGGGTTATACGTCAAAAGAAGTCATAGGAAGAAACTGTCGGTTTTTACAGGGTGCGGATACGGATCCGAATGACGTGGCAAGGATAAGGGAAGCGTTGGAAGGTGGAAAAAGCTTTTGTGGAAGATTACTGAACTACAAGAAGGATGGAACTCCCTTCTGGAACCTTCTCACTATTTCACCCATCAAGGATGATGATGGCAATGTGCTCAAGTTAATTGGAATGCTGGTGGAGGTTAATAAGCATACTGAGGGGTCCAAAGAGAAGAAGCTGCGTCCCAATGGGTTGCCTGAATCCTTAATTCGATATGATGCTCGTCAGAAAGAGAAGGCTACATCTTCTGTAGATGAGTTATTACAGGCCATGAAGCGCCCCCGCGCATTGAGTGAATCCGGACACCGTCCCTTTATCAGAAAATCAGGAGGAGGTGGAGGTAGTGAAGAAGATGAAGGAACAGAAAGATTAGATAACAAATCGAGGAGAAAATCTGATAGCGTAGCTTCTTTTAGACCAAAACCACAAGGAAAAGTTAGACATTCTATGGAACGAATTAGTGAGCTGCCTGACAATAAACAGAAAAACTCTCGTCGTGGTTCTTTCATGGGGTTCATGAGAAAAAGTCATTCCATTGACGAAAGCATTGATAATGAAGTTATTGTAGATGTGAGCTCTGGGAGTGAGGATGATGAGAGGGATGATAGTTTTGAACTTGATGACAAAGAAAAACTGAGGGAAAAAAGAAAAGGTCTTGATCTTGCTACTACACTTGAGCGTATTGAGAAAAACTTTGTCATTACCGATCCAAGGCTTCCAGACAATCCTATAATCTTTGCATCTGATAGTTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGGAAAAATTGCAGGTTTCTGCAAGGACCAGAAACTGATCCAGCAACTGTGAGAAAAATCCGAGAGGCAATTGACAACCAAACAGAAGTAACTGTGCAACTAATCAATTATACTAAGAGTGGGAAAAAGTTCTGGAACTTGTTTCATTTACAACCTATGCGTGATCATAAGGGAGAAGTACAATACTTCATTGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAATTGCATTGCAGAAGACACTGCAAAGGAGGGAGAACTATTGGTAAAAGAAACGGCAGAAAATGTTGGTGAGGCGGTGAAAGAGCTTCCTGATGCTAATCAGAAACCAGACGATTTATGGATGAATCATTCAAAAGTGGTTCGGCCAAAACCTCATAGGAAGGATGATGAAGCTTGGAGAGCAATCCTAAAGGTTGTAGAAAATGGAGAACAGGTAGGCCTAAAACACTTTAGGCCAATTAAACCTTTGGGGTCTGGAGACACCGGAAGTGTGCATCTGGTGGAGCTAGAAGGAACAGGTCATTACTTTGCTATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGCAATAAGGTGCATAGAGCTTGCACTGAAAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCTTTCCAGACCAAAACACATGTTTGTTTGATAACTGATTACTATCCTGGGGGAGAACTATTCCTACTTCTTGACCAGCAGCCAACAAAGGTTCTCAAGGAAGATTCTGTTAGATTTTATGCAGCTGAGGTAGTGATTGCGTTGGAGTATCTTCATTGTCTAGGCATAATTTACCGGGATTTGAAGCCAGAAAATGTGCTGATCCAGAGCAACGGACATGTGTCTCTAACAGATTTTGATTTATCATGTTTAACATCTTGCAAGCCACAGCTTATACTTCCAGCTACTGAGGAAAAGAAGAAGAGGAAGAAGAAAAAGAAGGGACAAGAGAAAAATCAAGAGGTTCCAATGTTCATGGCAGAACCAATGAGAGCGTCCAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGTCATACTAGTGCCGTGGATTGGTGGGCTCTAGGTATTCTTCTATATGAAATGCTCTACGGATATACACCATTCAGAGGAAAGACGAGACAAAAGACATTTGCAAACATTCTTCACAAAGATCTTAAGTTTCCCAAAAGCAAACCGGTAAGTCCCCATGGAAAGCAATTAATTTACTGGCTATTGCACAGAGATCCCAAAAACAGATTGGGTTCACTTGAAGGAGCAAATGAAATTAAGAACCATCCATTCTTCAAGAATGTCAATTGGGCTCTAGTTCGTTGCACGAAACCTCCTGAGCTTGACGCTCCTATCTTCCTGGAAAATGGTGAGAAGAAAGAAGCCAAAGACATTGACCCTGGCTTAGATGATTTACAGAAAAATATTTTCTGA 2937 0.429 MEHLKKSPSSSSSSSMRPSFPRDPRGSLEVFNPTSNSSSPVRSPSNLKNWTETKEEQRKEISELHTEFSDEITNTSWMAIKEGETGAAVQRAAEWGLVLTTDAETGKPQGVAVRHSGGDEPNVKLETKRNSNNSVRTSGESSDGGDPRGFPRVSEDLKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPNDVARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPIKDDDGNVLKLIGMLVEVNKHTEGSKEKKLRPNGLPESLIRYDARQKEKATSSVDELLQAMKRPRALSESGHRPFIRKSGGGGGSEEDEGTERLDNKSRRKSDSVASFRPKPQGKVRHSMERISELPDNKQKNSRRGSFMGFMRKSHSIDESIDNEVIVDVSSGSEDDERDDSFELDDKEKLREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHKGEVQYFIGVQLDGSQHVEPLHNCIAEDTAKEGELLVKETAENVGEAVKELPDANQKPDDLWMNHSKVVRPKPHRKDDEAWRAILKVVENGEQVGLKHFRPIKPLGSGDTGSVHLVELEGTGHYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYYPGGELFLLLDQQPTKVLKEDSVRFYAAEVVIALEYLHCLGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSCKPQLILPATEEKKKRKKKKKGQEKNQEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSPHGKQLIYWLLHRDPKNRLGSLEGANEIKNHPFFKNVNWALVRCTKPPELDAPIFLENGEKKEAKDIDPGLDDLQKNIF 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi11g00093 978 SMART serkin_6 639 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi11g00093 978 SUPERFAMILY Protein kinase-like (PK-like) 626 949 IPR011009 -
Vivi11g00093 978 FunFam Putative LOV domain-containing protein 167 323 - -
Vivi11g00093 978 FunFam Putative LOV domain-containing protein 723 945 - -
Vivi11g00093 978 Gene3D Transferase(Phosphotransferase) domain 1 723 943 - -
Vivi11g00093 978 CDD PAS 453 553 IPR000014 -
Vivi11g00093 978 PANTHER FLIPPASE KINASE 1-RELATED 129 951 - -
Vivi11g00093 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672|GO:0006468
Vivi11g00093 978 SMART pas_2 155 224 IPR000014 -
Vivi11g00093 978 SMART pas_2 440 509 IPR000014 -
Vivi11g00093 978 ProSiteProfiles Protein kinase domain profile. 639 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi11g00093 978 Pfam PAS domain 174 269 IPR000014 -
Vivi11g00093 978 Pfam PAS domain 461 553 IPR000014 -
Vivi11g00093 978 CDD STKc_phototropin_like 637 952 - -
Vivi11g00093 978 CDD PAS 180 269 IPR000014 -
Vivi11g00093 978 Gene3D PAS domain 427 591 - -
Vivi11g00093 978 ProSiteProfiles PAS repeat profile. 153 224 IPR000014 -
Vivi11g00093 978 ProSiteProfiles PAC domain profile. 512 566 IPR000700 -
Vivi11g00093 978 SUPERFAMILY PYP-like sensor domain (PAS domain) 174 266 IPR035965 -
Vivi11g00093 978 ProSiteProfiles PAC domain profile. 227 281 IPR000700 -
Vivi11g00093 978 MobiDBLite consensus disorder prediction 127 141 - -
Vivi11g00093 978 MobiDBLite consensus disorder prediction 365 383 - -
Vivi11g00093 978 Gene3D PAS domain 167 321 - -
Vivi11g00093 978 ProSitePatterns Protein kinases ATP-binding region signature. 645 668 IPR017441 GO:0005524
Vivi11g00093 978 Pfam Protein kinase domain 641 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi11g00093 978 MobiDBLite consensus disorder prediction 49 67 - -
Vivi11g00093 978 NCBIfam PAS domain S-box protein 463 553 IPR000014 -
Vivi11g00093 978 NCBIfam PAS domain S-box protein 180 273 IPR000014 -
Vivi11g00093 978 MobiDBLite consensus disorder prediction 314 388 - -
Vivi11g00093 978 MobiDBLite consensus disorder prediction 106 152 - -
Vivi11g00093 978 MobiDBLite consensus disorder prediction 333 357 - -
Vivi11g00093 978 FunFam LOV domain-containing protein 427 591 - -
Vivi11g00093 978 Coils Coil 47 67 - -
Vivi11g00093 978 MobiDBLite consensus disorder prediction 406 425 - -
Vivi11g00093 978 Gene3D Phosphorylase Kinase; domain 1 638 722 - -
Vivi11g00093 978 MobiDBLite consensus disorder prediction 1 72 - -
Vivi11g00093 978 MobiDBLite consensus disorder prediction 29 48 - -
Vivi11g00093 978 SUPERFAMILY PYP-like sensor domain (PAS domain) 454 553 IPR035965 -
Vivi11g00093 978 ProSiteProfiles PAS repeat profile. 438 511 IPR000014 -
Vivi11g00093 978 SMART pac_2 230 272 IPR001610 -
Vivi11g00093 978 SMART pac_2 515 557 IPR001610 -
Vivi11g00093 978 FunFam LOV domain-containing protein 638 722 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi11g00093 1 978 AGC Kinase Gene Family AT3G45780 67.515 0.0 1309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vivi11g00093 Pkinase 1e-62 CL0016