Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi11g00046 ATGTCTCAAAGAATCGGAACAAAGCTATTTGTCAGCAGACTATCATTTTACACTACAAACGACCAGTTCGTGAAATTGTTCTCACCATTCGGAGCACTTAAAGAAGCTTCACTTGTGGTAGACCCAAAAACCAAAAGACCTAAAGGCTTTGGTTTTGTGTCCTATGACTCTGAAATTGAAGCAGAAAAGGCCATGAAAGCGTTAAATGGAAGGATAGTTGATGGAAGGCTAATTTTTGTTGAACCTGCAAAATTGAAGGATTCTTGA 267 0.3858 MSQRIGTKLFVSRLSFYTTNDQFVKLFSPFGALKEASLVVDPKTKRPKGFGFVSYDSEIEAEKAMKALNGRIVDGRLIFVEPAKLKDS 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi11g00046 88 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vivi11g00046 88 SUPERFAMILY RNA-binding domain, RBD 6 84 IPR035979 GO:0003676
Vivi11g00046 88 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 88 - -
Vivi11g00046 88 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 8 83 - -
Vivi11g00046 88 Gene3D - 2 88 IPR012677 -
Vivi11g00046 88 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vivi11g00046 88 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi11g00046 11 81 Eukaryotic Initiation Factors Gene Family AT5G06000 39.437 4.99e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi11g00046 - K13195 pcin:129306862 131.339