Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi11g00045 | ATGTCTCAAAGAATCGGAACAAAGCTATTTGTCAGCAGACTATCATTTTACACTACAAACGACCAGTTCGTGAAATTGTTCTCACCATTCGGAGCACTTAAAGAAGCTTCACTTGTGGTAGACCCAAAAACCAAAAGACCTAAAGGCTTTGGTTTTGTGTCCTATGACTCTGAAATTGAAGCAGAAAAGGCCATGAAAGCGTTAAATGGAAGGTTGATGGAAGGCTAA | 228 | 0.3991 | MSQRIGTKLFVSRLSFYTTNDQFVKLFSPFGALKEASLVVDPKTKRPKGFGFVSYDSEIEAEKAMKALNGRLMEG | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi11g00045 | 75 | Gene3D | - | 2 | 75 | IPR012677 | - | |
| Vivi11g00045 | 75 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 8 | 75 | - | - | |
| Vivi11g00045 | 75 | SMART | rrm1_1 | 8 | 75 | IPR000504 | GO:0003723 | |
| Vivi11g00045 | 75 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 74 | IPR000504 | GO:0003723 | |
| Vivi11g00045 | 75 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 75 | IPR035979 | GO:0003676 | |
| Vivi11g00045 | 75 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 75 | IPR000504 | GO:0003723 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi11g00045 | 11 | 70 | Eukaryotic Initiation Factors Gene Family | AT5G06000 | 41.667 | 2.64e-10 | 52.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi11g00045 | - | K13195 | gmx:100781760 | 114.005 |