Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi11g00019 ATGAAGCTTTTGATCCCTTCACACACTCTTCCCTTTTCTTCTCTATCCCAAACCCAACCCATGGAACAACAACAACAATCTTCAACTACTAACAACCCTGATAAAGTTCATCTTGCCGTTGGTAAATCGCTTCACAAAACCACAGCCTTGCTTCAATGGACTATTAGTCACTTTCGGAATGCTGAAATTGTTATTGTTCATGTTTATCAACCTTCTCCTGTTATACCTACTCTATTGGGGAAAATGCCAGCTTCCCAAGCTAATCCTGAAGTGGTAACTGCTTTTAGAAGAGAGGAAAGAGAACAGACTATGAGATTAACCGATAAGTATTTGAGGATTTGCTTTGCATCTAAGGTGAAGGCGAGTGTTATTGTAACGGAAGCCAACCAAGTCCAAAAAGGAATTGTTGATTTTGTTGTTAAACATAATATTACAAAGCTTGTCATTGGAGCGGAGTCGGAAAATTGCATGAAAGTGAAAAGGAACTCCGGGAAAGCAAATTATGCTTCGAAACATGCTCCCCTGTTTTGTGAAATATGGTTTATCTATAAAGGCAGACACATTTGGACAAGAGAGGCTACTGAAAAACCATGTTCTTTGTCTTCAGGCACCCAACCTGAGATTGCAGCGACAGAAAGCTTGAGATTTAGATCTTCTCAAAATGGTAAAAACGAATTACCCCATTCGGAATATCTTCAACCAAATTCTGCTAGAACTACAGTATGTTCTGGAATTAGAAGCTTGGATCTGGGTGAAATCATAGAAACTGAAGCCACTAATTCATCCAAATCGTCCAGTGGTAGCAGTTATTGCTCTCCGCAAAATTCTGTTGGGGTTTATCAAGATGCATATTCAGAGGAAGTGGAAGAAAGAATTAACAGTCAACTTATTGAAACCATAAGAGAAGCTGAGGCTGCAACTGATGAGTCCTTTGCAGAACTATTAAACTGCAGGAGGTTGGAAGTCGAAGCCATGGAAGCCATACAGAAGGTCAAATTGTTGGAATCTGCCCATGCACATGAGGTGGAGCTCAGAAAAGAAGCTGAGGAAGCACTTAGAGTTACCGTAACAGAACAACAAAAGCTCTTAGAAGAGAGTGAAAATATTTCCGGAGAGTTACAAATGACCATGAGAAATGTGGCCCTACTAGATAGCCGTGCTAAGGAAGCAACCCGTAGGCGAGATGAAGCTGCACACGAGCTCTTGCTAATTCAAACGTCAATATCAACCTTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTCCGCTGGCTGGAACGGTGGAAAAGTCGTGGGCAAATCGGAGCAGCACATTACAATGGGCTCATTGGATTTGCTGAAGAACTGCCTGAGTTGGCAGAATTTTCATTATCAGATATTGAAAATGCTACATGTAATTTTTCCGAGAGCTTTAAAATTGCGCAAGGTGGATTTGGTTGTATATATAAGGGGGAAATGTTGGGTAGAACCGTTGTTATAAAGAAGTTCCATCAACATAATGTGCAAGGACCAGCAGAGTTTCATCGAGAGGTTCAAATTCTTAGTAGTCTCCAACATCCTCATTTATTGACCTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTATCTCCCAAATGGAACTCTTCAAGACTACCTATTCCGTAAAAGTAACATTATCCCTTTGACATGGAATATCAGAGTACGAATGATTGCCGAAATTTCTAGTGCACTCTGCTTCTTACATTCTTTTAAACCGGAAGCTATTATCCACGGTTATCTTAAGCCTCAGACTATACTTCTTGATTCTTCACTTAGTTGCAAGATATGTGAATTCAGGTTCAGCAGGCTTGTTACAGAAGAGTCTCACTATAGTGCTAGTTTCCACTTGAGCTCGGAGCCAAAAGGTGCTTTCACATATACGGATCCCGAGTTTCAGAGAACTGGGGTACTGACACCCAAGTCTGACACCTACTCCTTTGGGCTTATTATTTTGCAACTCCTTACTGGCAGGACTCCAGTTGGATTAGCAGTTCTAGTTCGCCATGCAGTTTCATGTGGAAAATTGTCTTCAATTCTTGATTCTTCAGCTGGAGAATGGCCTTTATCTGTAGCTTCAAGGTTGGCTGAACTGGGTTTGCAATGTTGCGCACAAAATCGCAGAAACAGGCCAGAGTTAACACCTGCTCTTGTGAGAGAATTGGAACAGTTACACGTTTCAGAGGAGAGACCCGTACCATCGTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAATAGCAGCCGATGGATTTACATACGAAGGCGATGCCATACGTGAATGGTTAGAAAATGGACATGATACTTCTCCGATGACTAATTTAAAATTGATTCACTTGCTCCTCACTCCCAATCACTCAATTAGACTTGCCATCCAAGATTGGCTCTGCAAATCATAA 2448 0.4146 MKLLIPSHTLPFSSLSQTQPMEQQQQSSTTNNPDKVHLAVGKSLHKTTALLQWTISHFRNAEIVIVHVYQPSPVIPTLLGKMPASQANPEVVTAFRREEREQTMRLTDKYLRICFASKVKASVIVTEANQVQKGIVDFVVKHNITKLVIGAESENCMKVKRNSGKANYASKHAPLFCEIWFIYKGRHIWTREATEKPCSLSSGTQPEIAATESLRFRSSQNGKNELPHSEYLQPNSARTTVCSGIRSLDLGEIIETEATNSSKSSSGSSYCSPQNSVGVYQDAYSEEVEERINSQLIETIREAEAATDESFAELLNCRRLEVEAMEAIQKVKLLESAHAHEVELRKEAEEALRVTVTEQQKLLEESENISGELQMTMRNVALLDSRAKEATRRRDEAAHELLLIQTSISTLWQERQQIRRQKMEALRWLERWKSRGQIGAAHYNGLIGFAEELPELAEFSLSDIENATCNFSESFKIAQGGFGCIYKGEMLGRTVVIKKFHQHNVQGPAEFHREVQILSSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNIIPLTWNIRVRMIAEISSALCFLHSFKPEAIIHGYLKPQTILLDSSLSCKICEFRFSRLVTEESHYSASFHLSSEPKGAFTYTDPEFQRTGVLTPKSDTYSFGLIILQLLTGRTPVGLAVLVRHAVSCGKLSSILDSSAGEWPLSVASRLAELGLQCCAQNRRNRPELTPALVRELEQLHVSEERPVPSFFLCPILQEIMHDPQIAADGFTYEGDAIREWLENGHDTSPMTNLKLIHLLLTPNHSIRLAIQDWLCKS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi11g00019 815 CDD STK_N 35 185 - -
Vivi11g00019 815 Gene3D Transferase(Phosphotransferase) domain 1 544 744 - -
Vivi11g00019 815 CDD RING-Ubox_WDSUB1-like 746 801 - -
Vivi11g00019 815 PANTHER OS02G0152300 PROTEIN 36 809 - -
Vivi11g00019 815 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 50 153 - -
Vivi11g00019 815 Coils Coil 317 337 - -
Vivi11g00019 815 SUPERFAMILY Protein kinase-like (PK-like) 455 737 IPR011009 -
Vivi11g00019 815 ProSiteProfiles Protein kinase domain profile. 471 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi11g00019 815 Pfam Protein tyrosine and serine/threonine kinase 476 727 IPR001245 GO:0004672|GO:0006468
Vivi11g00019 815 SUPERFAMILY RING/U-box 742 814 - -
Vivi11g00019 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 745 815 IPR013083 -
Vivi11g00019 815 ProSiteProfiles U-box domain profile. 744 815 IPR003613 GO:0004842|GO:0016567
Vivi11g00019 815 Coils Coil 345 365 - -
Vivi11g00019 815 Gene3D Phosphorylase Kinase; domain 1 448 543 - -
Vivi11g00019 815 MobiDBLite consensus disorder prediction 13 35 - -
Vivi11g00019 815 Gene3D HUPs 26 162 IPR014729 -
Vivi11g00019 815 Coils Coil 380 400 - -
Vivi11g00019 815 ProSitePatterns Zinc finger C2H2 type domain signature. 607 629 IPR013087 -
Vivi11g00019 815 SMART Ubox_2 748 811 IPR003613 GO:0004842|GO:0016567
Vivi11g00019 815 Pfam U-box domain 745 814 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi11g00019 34 812 U-box Gene Family AT2G45910 36.273 1.52e-167 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi11g00019 PK_Tyr_Ser-Thr 4.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi11g00019 - - gmx:100788846 1242.64