Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi11g00013 ATGCAATTGTGCAGGATACTACAATCTTCAGGGAACATGGGAGTTTGTTTAAGCGCTCAAATCAAAGCTGAAACTCCTTATAACACCGGGTTAAATTCGAAGAATTCGGCTTCACCTGGAAATGATCTGAGCAGCTCAAACAGTAAGGTTTCAGCTGCATCAGTGCCTCAGACTCCTCGGAGCGAAGGTGAAATCTTGAATTCGTCGAAATTAAAGAGCTATACTTTAGCAGAACTTAAGTCAGCTACTAGAAATTTTCGTCCGGATAGTGTGTTGGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGTTGGATTGATGAGAATTCATTGGCTGCTGCTAAACCTGGTACTGGAATTGTTATTGCTGTTAAAAGACTTAATCTAGAAAGCTTCCAAGGTCACAAAGAGTGGTTGGCCGAAGTCAACTATCTTGGACAATTTTCTCATCCTCATCTGGTGAAATTGATTGGTTATTGCCTCGAAGATGAACACCGCCTTCTTGCCTATGAGTTTATGCCCCGTGGAAGCTTGGAGAATCACTTGTTCAGGAGAGGATCATATTTTCAGCCTCTTTCATGGAGCTTGCGTGTGAAGGTTGCTCTTGACGCCGCCAAAGGGCTTGCATTTCTGCACAGTGCTGAAAATAAAGTGATATATAGAGATTTCAAGACTTCAAATGTCTTGTTGGATTCTGACTATAATGCAAAGCTTTCTGATTTCGGGTTGGCAAAAGACGGTCCAACCGGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGGACCTACGGATATGCAGCACCTGAATATCTAGCGACAGGTCATCTTACCACTAAGAGTGATGTCTATAGTTTCGGAGTTGTCCTGCTTGAAATGTTATCCGGTAAGAGAGCGGTTGACAAGAATAGACCGTCTGGACAACACAACTTGGTGGAATGGGCTAAACCGTATCTGGCAAACAAACGTAAGATTTTCAGCGTGATAGACAGTCGGCTCGAAGGGCAGTATTCAGCAGACGAGTCCTTCAAGGTAGCCACCCTTGCTTTGCGATGCCTCTCAACAGAATCCAAGTACAGGCCCAACATGGATGAAGTTGTTACTATCTTGGAGCAGCTGAAGGTTCCTAATGTGAATGCAGGAAATCCTAAGCGTTATCGGAGAAAAAGTGCCGATGATGTTAGCCATGCAAAGAATAACACATCTATTGCTAGTACGAAGAGTCACAATGCTTATCCGCGTATCACATTGTCTCCTCTCTATACATGA 1263 0.4371 MQLCRILQSSGNMGVCLSAQIKAETPYNTGLNSKNSASPGNDLSSSNSKVSAASVPQTPRSEGEILNSSKLKSYTLAELKSATRNFRPDSVLGEGGFGSVFKGWIDENSLAAAKPGTGIVIAVKRLNLESFQGHKEWLAEVNYLGQFSHPHLVKLIGYCLEDEHRLLAYEFMPRGSLENHLFRRGSYFQPLSWSLRVKVALDAAKGLAFLHSAENKVIYRDFKTSNVLLDSDYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPYLANKRKIFSVIDSRLEGQYSADESFKVATLALRCLSTESKYRPNMDEVVTILEQLKVPNVNAGNPKRYRRKSADDVSHAKNNTSIASTKSHNAYPRITLSPLYT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi11g00013 420 ProSitePatterns Protein kinases ATP-binding region signature. 92 124 IPR017441 GO:0005524
Vivi11g00013 420 MobiDBLite consensus disorder prediction 378 405 - -
Vivi11g00013 420 Gene3D Phosphorylase Kinase; domain 1 61 171 - -
Vivi11g00013 420 Gene3D Transferase(Phosphotransferase) domain 1 172 392 - -
Vivi11g00013 420 SUPERFAMILY Protein kinase-like (PK-like) 62 368 IPR011009 -
Vivi11g00013 420 ProSiteProfiles Protein kinase domain profile. 86 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi11g00013 420 PANTHER OS01G0588500 PROTEIN-RELATED 49 372 - -
Vivi11g00013 420 FunFam Serine/threonine-protein kinase BIK1 53 171 - -
Vivi11g00013 420 MobiDBLite consensus disorder prediction 29 65 - -
Vivi11g00013 420 FunFam Probable serine/threonine-protein kinase PBL8 172 388 - -
Vivi11g00013 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Vivi11g00013 420 Pfam Protein tyrosine and serine/threonine kinase 90 367 IPR001245 GO:0004672|GO:0006468
Vivi11g00013 420 CDD STKc_IRAK 92 371 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi11g00013 64 368 Glycoside Hydrolase AT3G07070 49.346 8.00e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi11g00013 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi11g00013 - - gmx:100798404 665.611