Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi11g00012 ATGGGAGTTTGTTTAAGCGCTCAAATCAAAGCTGAAACTCCTTATAACACCGGGTTAAATTCGAAGAATTCGGCTTCACCTGGAAATGATCTGAGCAGCTCAAACAGTAAGGTTTCAGCTGCATCAGTGCCTCAGACTCCTCGGAGCGAAGGTGAAATCTTGAATTCGTCGAAATTAAAGAGCTATACTTTAGCAGAACTTAAGTCAGCTACTAGAAATTTTCGTCCGGATAGTGTGTTGGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGTTGGATTGATGAGAATTCATTGGCTGCTGCTAAACCTGGTACTGGAATTGTTATTGCTGTTAAAAGACTTAATCTAGAAAGCTTCCAAGGTCACAAAGAGTGGTTGGCCGAAGTCAACTATCTTGGACAATTTTCTCATCCTCATCTGGTGAAATTGATTGGTTATTGCCTCGAAGATGAACACCGCCTTCTTGCCTATGAGTTTATGCCCCGTGGAAGCTTGGAGAATCACTTGTTCAGGAGAGGATCATATTTTCAGCCTCTTTCATGGAGCTTGCGTGTGAAGGTTGCTCTTGACGCCGCCAAAGGGCTTGCATTTCTGCACAGTGCTGAAAATAAAGTGATATATAGAGATTTCAAGACTTCAAATGTCTTGTTGGATTCTGACTATAATGCAAAGCTTTCTGATTTCGGGTTGGCAAAAGACGGTCCAACCGGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGGACCTACGGATATGCAGCACCTGAATATCTAGCGACAGGTCATCTTACCACTAAGAGTGATGTCTATAGTTTCGGAGTTGTCCTGCTTGAAATGTTATCCGGTAAGAGAGCGGTTGACAAGAATAGACCGTCTGGACAACACAACTTGGTGGAATGGGCTAAACCGTATCTGGCAAACAAACGTAAGATTTTCAGCGTGATAGACAGTCGGCTCGAAGGGCAGTATTCAGCAGACGAGTCCTTCAAGGTAGCCACCCTTGCTTTGCGATGCCTCTCAACAGAATCCAAGTACAGGCCCAACATGGATGAAGTTGTTACTATCTTGGAGCAGCTGAAGGTTCCTAATGTGAATGCAGGAAATCCTAAGCGTTATCGGAGAAAAAGTGCCGATGATGTTAGCCATGCAAAGAATAACACATCTATTGCTAGTACGAAGAGTCACAATGCTTATCCGCGTATCACATTGTCTCCTCTCTATACATGA 1227 0.4377 MGVCLSAQIKAETPYNTGLNSKNSASPGNDLSSSNSKVSAASVPQTPRSEGEILNSSKLKSYTLAELKSATRNFRPDSVLGEGGFGSVFKGWIDENSLAAAKPGTGIVIAVKRLNLESFQGHKEWLAEVNYLGQFSHPHLVKLIGYCLEDEHRLLAYEFMPRGSLENHLFRRGSYFQPLSWSLRVKVALDAAKGLAFLHSAENKVIYRDFKTSNVLLDSDYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPYLANKRKIFSVIDSRLEGQYSADESFKVATLALRCLSTESKYRPNMDEVVTILEQLKVPNVNAGNPKRYRRKSADDVSHAKNNTSIASTKSHNAYPRITLSPLYT 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi11g00012 408 Pfam Protein tyrosine and serine/threonine kinase 78 355 IPR001245 GO:0004672|GO:0006468
Vivi11g00012 408 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi11g00012 408 SUPERFAMILY Protein kinase-like (PK-like) 50 356 IPR011009 -
Vivi11g00012 408 FunFam Probable serine/threonine-protein kinase PBL8 160 376 - -
Vivi11g00012 408 MobiDBLite consensus disorder prediction 366 393 - -
Vivi11g00012 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vivi11g00012 408 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Vivi11g00012 408 CDD STKc_IRAK 80 359 - -
Vivi11g00012 408 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Vivi11g00012 408 Gene3D Transferase(Phosphotransferase) domain 1 160 380 - -
Vivi11g00012 408 PANTHER OS01G0588500 PROTEIN-RELATED 38 360 - -
Vivi11g00012 408 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Vivi11g00012 408 MobiDBLite consensus disorder prediction 15 53 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi11g00012 52 356 Glycoside Hydrolase AT3G07070 49.346 2.98e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi11g00012 PK_Tyr_Ser-Thr 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi11g00012 - - gmx:100798404 665.611