Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1199g00001 ATGAATGTTACTCGTTCTGCTCTGAAGCTCCATCTTCAAACCTCCCCAATCCGCTACCAATTCTTCTTCTCACGCTTCAACAATGCTCTTCGCAATCCCAACTCGTCTTCTTCTCTGTTCAATTTCAGAGCAAAGCGCTTCTTTTCTCTGACCCTTCCGCGCCAAACGCAGACGCAACCCTTTGTTGGAAGCGCCGTTTCGTCGACCTCGTCGGAGGATTTCAAAGGCCGTGACAGTTTCTTTGCTGAAGATAACGTTTCGTGGAGCTCACTTGGTTTATCTGATACAGTCTCTGGTGCTCTCGCTAATATTGGTCTTAAAACACCATCTCTTGTTCAGGCTTCTTCTATACCGCCTGTTTTGTCAGGGATGGATGTAGTTATTGCTGCCGAGACCGGAAGTGGTAAGACATACAGTTATCTACTTCCTCTTATTGATAAGCTGAGGGAGGCACAAGAACAATCTCTGGATGTTGTATCTGACAAAGAAGTCTATCCACCGGCTGGAAAAGTTCTGCTTGTGCTTTGTCCGAATGTGCAACTGTGTGAGCAGGTAGTTAAGATGGCTAATAGTCTTTGTGTCGAGAATGGTGGAACCATTGTTAATGCGGCATCCATTTGTGGAAGACAGGGATGGCCGATTCGGGAACCTGATATCATTGTGACGACACCTGCTGCTCTTCTCAATCATGTTGACGTTGATAGAAGGCGGCGCATGGAATTTATGCGTGGTGTCAAACATGTGGTGTTTGATGAAGCTGATATGCTTCTTTGTGGAAGCTTCCAGAATAAAGTAATCCGACTGATTCAATTGCTCCGCTATGATGAAAAACTTTTGTCTCGATCACAAACACCAGAATCAGAATTGGCACTGAAAGTGGAGGAATCTTCTTTGTTGTCGGATGATGCTTTGGAAGCTGAAGATGAATTTCCACCTGAAGCCATCTCAGATGAGGAGGATGATGATAAAGAGGATCTTGTCATTATTAATGATGAAGCTGAATCTGTTAAAAAAACAAGAAGAGAGTGGAGGAGAGTGAGGAAACATTATGAGCGTAGTAAACAGTATGTTTTTGTTGCAGCTACACTTCCAGTGAATGGAAAGAAAACAGCTGGAGCATTATTAAAACACATGTTTCCTGATGCTGTGTGGGTTAGTGGAAACTATCTTCACCGTCACAATCCAAGATTGAAGCAAAGATGGATAGAAGTGAGCGTTGATACACAGGTGAAAGAACTCATAAAGGCTGTGAATCACGGTTTAGAATCTGAAGATTTGGATAGTGATGGTGGCATTTGTAGAACAATGGTGTTTGCCAATACTGTTGAAGCTGCTGAAGCTGTGGCAAAGATATTGAACTTTACTGGGCTTGAATGTTTACGTTATCATAAGAATTGCACATTGGAAGAGCGAGCACAGACATTAGTTGATTTCCACGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTGGATATTCCAAACGTCTTGCATGTTATTCAGGCGGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGATTGGTCGTACAGCTAGAGCTGGTCAAAACGGACTAGTTACTAGCATGTACACCGAGTCCAACAGGGAGCTTGTACAGGCAGTTCGTCAAGCTGGGGAACTCGGTCTACCTGTGGAGACTGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGCTCAAAAAGAAAGCAAATGCTGACAAAGCTAGAGATTCAGCAGCCATTGAAGAGACTGTTACAGCTTGA 1776 0.4369 MNVTRSALKLHLQTSPIRYQFFFSRFNNALRNPNSSSSLFNFRAKRFFSLTLPRQTQTQPFVGSAVSSTSSEDFKGRDSFFAEDNVSWSSLGLSDTVSGALANIGLKTPSLVQASSIPPVLSGMDVVIAAETGSGKTYSYLLPLIDKLREAQEQSLDVVSDKEVYPPAGKVLLVLCPNVQLCEQVVKMANSLCVENGGTIVNAASICGRQGWPIREPDIIVTTPAALLNHVDVDRRRRMEFMRGVKHVVFDEADMLLCGSFQNKVIRLIQLLRYDEKLLSRSQTPESELALKVEESSLLSDDALEAEDEFPPEAISDEEDDDKEDLVIINDEAESVKKTRREWRRVRKHYERSKQYVFVAATLPVNGKKTAGALLKHMFPDAVWVSGNYLHRHNPRLKQRWIEVSVDTQVKELIKAVNHGLESEDLDSDGGICRTMVFANTVEAAEAVAKILNFTGLECLRYHKNCTLEERAQTLVDFHEKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRIGRTARAGQNGLVTSMYTESNRELVQAVRQAGELGLPVETAFSRKRSFRNKLKKKANADKARDSAAIEETVTA 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1199g00001 591 SMART helicmild6 446 526 IPR001650 -
Vivi1199g00001 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 538 IPR027417 -
Vivi1199g00001 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 381 IPR014001 -
Vivi1199g00001 591 SMART ultradead3 105 400 IPR014001 -
Vivi1199g00001 591 Gene3D - 398 591 IPR027417 -
Vivi1199g00001 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 425 567 IPR001650 -
Vivi1199g00001 591 Pfam DEAD/DEAH box helicase 112 274 IPR011545 GO:0003676|GO:0005524
Vivi1199g00001 591 Pfam Helicase conserved C-terminal domain 434 526 IPR001650 -
Vivi1199g00001 591 Gene3D - 64 380 IPR027417 -
Vivi1199g00001 591 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 95 550 - -
Vivi1199g00001 591 MobiDBLite consensus disorder prediction 571 591 - -
Vivi1199g00001 591 CDD SF2_C_DEAD 397 535 - -
Vivi1199g00001 591 CDD DEADc 100 279 - -
Vivi1199g00001 591 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 114 IPR014014 GO:0003724
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1199g00001 484 543 Eukaryotic Initiation Factors Gene Family AT3G13920 38.333 2.65e-07 51.2