Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1197g00005 ATGGATCTCTCTCAAGATCCACCAGAGGACTTTACCAGATCCTCATCCAAAAAACGAATGGGTAGACCATTAGGCTCGAAGAACAAGCCCAAACCACACATTGTTATCGAGGAAGACACACAAAACTTCACAGAACTAGTTGGACTTGAGATCCCAATAGGAGAAGATATTGTAGAGCATATAATCAAATATGCTCAACAACGTCACGCCAACATAAGAGTGTTGAGGGGTTTCGGTCTTATCTCTAATGTTACCATTCTTGATCCAGTAACTCGCGACCCATTATTACCCATTGAAGGACCCATACATATGACATCTTTATTTGGAACATATATAAATCCAAATTGTCAATGTTCTCCTCCACAGTTCATAGCTCATCCACCATGTTCCTCTTTTACTGTATACTTCTCTAGTCCTAATGCATATGTGTTTGGAGGAGTTGTTGTTGGAAAAATTACTGCTGCTAGTGTTATTTTTATTAATGCCACTCTTTCTAGAAAAACTGCATTCCACAAGACGGTCTCCACCAATAGAAATGTTTGA 543 0.3923 MDLSQDPPEDFTRSSSKKRMGRPLGSKNKPKPHIVIEEDTQNFTELVGLEIPIGEDIVEHIIKYAQQRHANIRVLRGFGLISNVTILDPVTRDPLLPIEGPIHMTSLFGTYINPNCQCSPPQFIAHPPCSSFTVYFSSPNAYVFGGVVVGKITAASVIFINATLSRKTAFHKTVSTNRNV 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1197g00005 180 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 168 IPR014476 GO:0003680
Vivi1197g00005 180 SUPERFAMILY AF0104/ALDC/Ptd012-like 48 171 - -
Vivi1197g00005 180 Pfam Plants and Prokaryotes Conserved (PCC) domain 49 160 IPR005175 -
Vivi1197g00005 180 ProSiteProfiles PPC domain profile profile. 41 180 IPR005175 -
Vivi1197g00005 180 MobiDBLite consensus disorder prediction 1 32 - -
Vivi1197g00005 180 CDD DUF296 49 160 IPR005175 -
Vivi1197g00005 180 Gene3D - 46 178 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1197g00005 17 172 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 30.818 3.38e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1197g00005 - - vvo:131640444 367.851