Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1197g00003 ATGGTGGGTGACGACGATGCTCCAGCTCCGTGCCACCTTCCGTCTAACCGGAAAATGTTCTGGCGGTCGGCGTCGTGGTCTTCCGCTCGTTCCTCCGCCGCTAACCCGTCCGGTGAACCGGAGTCGAATTTTGCTGATCCCAATTCAAATTCAGCTGAAGGGATTAATACCAACCGGAGATTTCCTCCACCTCCATTGACGCCGAGGAGCCAGCAGAATTGTAAGGCGAGGTCGTCGTGTTTGCCGCCGCTTCAGCCGCTTTCGATTGCTCGCCGGAGTTTGGATGAGTGGCCGAAGGCGAGTTCGGATGATATCGGGGAGTGGCCGCAACCGCCGATTACTCCCGGTGGTAGAGGTAATGGTAATGGTAATGGTAATAGTAGTGTTAGTAATAGCAATGGTGAAAGGTTGAAACTTGATTTGTCTTCTATTCAGCAGAATAGTAATCATGATAGTAGGAATAATGGGGGGCTTGTGAAGAGAGATAAGATTGCTTTTTTCGATAAGGAGTGTTCGAAAGTTGCTGAACATGTTTACCTTGGTGGTGATGCTGTTGCTAAGGATAGGGGGATTTTGAAAAGGAATGGGATTACTCATGTTTTGAATTGTGTAGGTTTCGTGTGTCCGGAGTATTTCAAAGCTGATTTTGTGTATAGAACTTTGTGGTTACAGGATAGTCCTAGTGAGGATATAACTAGTATTTTGTATGATGTGTTTGATTACTTTGAGGATGTTAGGGAAAAGAGTGGGAGGGTGTTTGTTCATTGTTGTCAAGGGGTGTCGAGGTCGACTTCTCTTGTTATTGCTTATCTTATGTGGAGGGAAGGGCAGAGTTTCGATGATGCTTTTCAGTTTGTGAAGGCGGCCAGAGGTATTGCGGATCCGAATATGGGTTTCGCTTGTCAGTTGTTGCAGTGTCAGAAAAGGGTTCACGCGTTTCCGCTTAGTCCTAGCTCGTTGTTGAGAATGTATAGGATTGCTCCTCACTCGCCGTATGATCCTTTGCATCTTGTTCCCAAGATGTTGACCGATCCGTCTTCGTGTGCTCTTGACTCTAGGGGTGCGTTTATAGTTCACATTCCGTCTGCAATATATGTTTGGATTGGCAAGAAGTGTGAGGCTATTATGGAAAGGGATGCTAGAGGGGCTGCGGGTCAGATTGTCCGGTATGAAAGAGTGCAAGGATCTATTATCATGATTAAGGAAGGTGAGGAACCGCCTTCTTTTTGGGATGCTTTTTCGAAGTTTTTGCCTTTGATGGACATATCGGGAAGTGGGGTAGAAAGTAGCAAAACAAGTGTTATAAATTTTCCTGGCGAGAGGAAAGTGGATGCGTACAATGTCGATTTTGAAGTTTTTGGAAAAGCCATCGTGGGAGGTTTTGTGCCTCCGTTTGCGTCATTAGAGAACGAACATGAAACCCATCTTCCCGCAAGAGAGAGTAGCTGGAGTGTTTTAAGGCGGAAAGATTCCTCCGCAAATGTGAAGGAATTTGTCTCGGCCCCTAAGTTATCCTTACCGCGAGTCTATTCAGATTCCGTGTTGTGTATTCATGCATCTGCAATTTCATTTCCATCCCCATCATCATCGTCAACAACATCGTCTTTATCATCATCCTCTTCACCGCCTTTTGTCTCTCCAGATTCCGATTCTTCTGATTCTAGCAATCACTCAAAGTTTTTGTTAGAATTGTCACCAGATTCTTCCTCTCTAGTTCTTGCTCCCGTTCCGGTATCTTCATCTTTGTCTAACTTCTCTAGTTTGTCCCTCTCAAATTCCACCTCTCTACCGGTGTCTAACTGTAAAGATATCTATGATGTCAAATTATCAAATCTATCTTCTCAGTCTGCCTCTTTACCATCCAAAAAATCATCGACTTCCATTGCTGAACGCAGAGGTAGTTTATCGAAGTCTTTGAAGTTGCCTCTAATGAATGATAAGACTCAAGTAATAGATAAACCATCAACTATTTCTGCTGGTCGGGAACACGGTGTTCTCAGTAACAACAACTTTAGCTGTGTACAAGATTCAGACAGTATAGACTATTTGTTCGAGTCCACCAATCATCATCATGTCAAAGACAGAGCTGAGCCTTCCGTAGATAGTTTGTCAAGAGAAAATTTGAAGTCTACCGCGTCAAAGGGAACTAATGAGAGCGACTCATTGCAATGTACTAGGACACAAACTGTAGTATATCGCTGGCCTAGTTTAGAAAAGATCGAGACATTTGGTTCCAATCATTTGAGCTCTGAGGCTGCTTTTGTTATATTCTCTCCAAGTATACTTATGCCAGCAGGAAATGTTTTATATCTATGGGTAGGGAGTTCTTTCAAACTGGACGCTTCTTCACAGGATCGGTTAGATAGTGATAGGCAGTCCGATTTTCTTGAAGCAGTTGACTGGAACAGAATTGGCTGTGATCTTCTTGTTCAGTTTAATTTGCCGAAGAATACAGTTACTAAGATTGTTAAAGAGAATGAAGAACCCCGAGAGTTCCTTGCTTTGCTGAGTTCATTGTAG 2520 0.4389 MVGDDDAPAPCHLPSNRKMFWRSASWSSARSSAANPSGEPESNFADPNSNSAEGINTNRRFPPPPLTPRSQQNCKARSSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPITPGGRGNGNGNGNSSVSNSNGERLKLDLSSIQQNSNHDSRNNGGLVKRDKIAFFDKECSKVAEHVYLGGDAVAKDRGILKRNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREKSGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSSCALDSRGAFIVHIPSAIYVWIGKKCEAIMERDARGAAGQIVRYERVQGSIIMIKEGEEPPSFWDAFSKFLPLMDISGSGVESSKTSVINFPGERKVDAYNVDFEVFGKAIVGGFVPPFASLENEHETHLPARESSWSVLRRKDSSANVKEFVSAPKLSLPRVYSDSVLCIHASAISFPSPSSSSTTSSLSSSSSPPFVSPDSDSSDSSNHSKFLLELSPDSSSLVLAPVPVSSSLSNFSSLSLSNSTSLPVSNCKDIYDVKLSNLSSQSASLPSKKSSTSIAERRGSLSKSLKLPLMNDKTQVIDKPSTISAGREHGVLSNNNFSCVQDSDSIDYLFESTNHHHVKDRAEPSVDSLSRENLKSTASKGTNESDSLQCTRTQTVVYRWPSLEKIETFGSNHLSSEAAFVIFSPSILMPAGNVLYLWVGSSFKLDASSQDRLDSDRQSDFLEAVDWNRIGCDLLVQFNLPKNTVTKIVKENEEPREFLALLSSL 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1197g00003 839 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 229 290 IPR000387 GO:0016311|GO:0016791
Vivi1197g00003 839 MobiDBLite consensus disorder prediction 24 57 - -
Vivi1197g00003 839 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 165 311 IPR029021 -
Vivi1197g00003 839 CDD DSP 171 305 - -
Vivi1197g00003 839 ProSiteProfiles Dual specificity protein phosphatase domain profile. 170 312 IPR020422 GO:0006470|GO:0008138
Vivi1197g00003 839 SMART dsp_5 170 309 IPR020422 GO:0006470|GO:0008138
Vivi1197g00003 839 MobiDBLite consensus disorder prediction 703 720 - -
Vivi1197g00003 839 MobiDBLite consensus disorder prediction 95 134 - -
Vivi1197g00003 839 MobiDBLite consensus disorder prediction 524 558 - -
Vivi1197g00003 839 Gene3D Protein tyrosine phosphatase superfamily 142 312 IPR029021 -
Vivi1197g00003 839 ProSitePatterns Tyrosine specific protein phosphatases active site. 254 264 IPR016130 GO:0016311|GO:0016791
Vivi1197g00003 839 MobiDBLite consensus disorder prediction 117 134 - -
Vivi1197g00003 839 SUPERFAMILY Actin depolymerizing proteins 317 420 - -
Vivi1197g00003 839 PANTHER MKPA PROTEIN 14 836 - -
Vivi1197g00003 839 SMART VILL_6 322 416 IPR007122 GO:0051015
Vivi1197g00003 839 MobiDBLite consensus disorder prediction 693 720 - -
Vivi1197g00003 839 MobiDBLite consensus disorder prediction 24 82 - -
Vivi1197g00003 839 Gene3D Severin 321 417 IPR029006 -
Vivi1197g00003 839 Pfam Dual specificity phosphatase, catalytic domain 178 308 IPR000340 GO:0008138|GO:0016311
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1197g00003 2 206 Protein tyrosine phosphatase (PTP) family AT3G55270 58.049 2.85e-64 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1197g00003 - - vum:124838930 1090.49