Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1197g00001 ATGGCGTTGAATAGACTTCTTGACTTTGATTTGAAAGATGATTCTCGATGGAAGATTGATCCAAGTGATGAGGCTCTTATCAACATTTACCTAAGGAAGAAGGTTCATACTCAACCTCCTCCATTTAATAAAATTGTTGAATATGATGTGTTTCAAACTGAACCTTGGATGCAACCAAATAGTAGGAGTTCATTCAGAGATAGGAAGTATTACTTCTTTGATATAAGTAACAATAGATTTGAAAATATGGATACTAGACTAGTTGGAGTTGGTGAATGGAGGAGTTTGGAGAAGAACACTGAAATTTCCATGCCAACCAATATGTTCATTGGGAGAAAGAACACCCTTGAATTCTGA 357 0.3557 MALNRLLDFDLKDDSRWKIDPSDEALINIYLRKKVHTQPPPFNKIVEYDVFQTEPWMQPNSRSSFRDRKYYFFDISNNRFENMDTRLVGVGEWRSLEKNTEISMPTNMFIGRKNTLEF 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1197g00001 118 Gene3D NAC domain 22 118 IPR036093 GO:0003677|GO:0006355
Vivi1197g00001 118 PANTHER NAC TRANSCRIPTION FACTOR 56 19 118 - -
Vivi1197g00001 118 Pfam No apical meristem (NAM) protein 18 118 IPR003441 GO:0003677|GO:0006355
Vivi1197g00001 118 ProSiteProfiles NAC domain profile. 13 118 IPR003441 GO:0003677|GO:0006355
Vivi1197g00001 118 SUPERFAMILY NAC domain 20 118 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1197g00001 17 118 NAC Transcription Factor Family AT3G04070 30.556 4.01e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1197g00001 NAM 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1197g00001 - - vvo:131640443 248.825