Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1196g00004 ATGGATAAACCTCAAGGCTCTATGAACAAGCCTAAACCCCCTATTAAGATTGAGGAAGACACTAATACCACTATGAAGCAAATTCTTATCAAAATCCCTGCTGGAAACGATGTAGTGGAGTCCATCGTCAATTTTGCTTTGCATCATCAAGCTAATATCAGAGTACTAAAAGGTAGTGGTCTTATCTCTGATATTACTTTTCATAATCCAGTGTCCCATGCCTATGTATTCACATTACATGGGCCCTTTCAAATGACATCTATATCAGGAGAATATGTTAATACCAACTATGGTTGTGTTCCTTCCAGGCCCATCGATGAACCTACTTATTCCTCCTTTTCCATTTTCCTAACTCGTGGTGATGGAAAAGTGTTTGGTGGGGTTGTTCAAGGAAAGGTTAAGGCTGCAGGTGATATTCTAATCACCGCCACTCTTTCAAAGAAGTCCAAGTCTTTTAGGGGAGGCCACCATCATTTGAAGTATTCAAGAATTTAA 495 0.396 MDKPQGSMNKPKPPIKIEEDTNTTMKQILIKIPAGNDVVESIVNFALHHQANIRVLKGSGLISDITFHNPVSHAYVFTLHGPFQMTSISGEYVNTNYGCVPSRPIDEPTYSSFSIFLTRGDGKVFGGVVQGKVKAAGDILITATLSKKSKSFRGGHHHLKYSRI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1196g00004 164 SUPERFAMILY AF0104/ALDC/Ptd012-like 24 143 - -
Vivi1196g00004 164 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1196g00004 164 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 145 IPR014476 GO:0003680
Vivi1196g00004 164 Gene3D - 26 161 - -
Vivi1196g00004 164 Pfam Plants and Prokaryotes Conserved (PCC) domain 28 144 IPR005175 -
Vivi1196g00004 164 ProSiteProfiles PPC domain profile profile. 22 164 IPR005175 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1196g00004 3 143 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.867 5.79e-23 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1196g00004 - - vvo:131640436 280.026