Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1196g00001 ATGGATAAACCTCAAGGTTCTATGAACAAGCCTAAACCTATTAAGATTGAGGAAGACACTAATACCACTATGAAGCAAATTCTTATCAAAATTCCTGCTGGAAATGATGTAGTGGAATCCATCGTCAATGTTGCTTTGCATCATCAAGCTAATATCACAGTACTAAAAGGTAGTGGTCTTATCTCTGATATTACTTTTCATAACCCAGTGTCTCAAGCCTATGTATTCACATTACATGGACCCTTTCAAATGACATCTATATCAGGAGAATATGTTAATACCAACTATGGTTATGTTCCTTCCGGGCTCACCGATGAACCTACTTATTCCTCCTTTTCCATTTTCCTAACCCGTGGTGATGGAAAAGTTTTTGGTGGGGTTGTTCAAGGAAAGGTTAAGGCTGCAGGTGATATTCTAATCACCGCCACTCTTTCAAATAAGTCCAAGTCTTTTAGGGGAGGCCACCATCATTTGAAGTATTCAAGAATTTAA 492 0.3821 MDKPQGSMNKPKPIKIEEDTNTTMKQILIKIPAGNDVVESIVNVALHHQANITVLKGSGLISDITFHNPVSQAYVFTLHGPFQMTSISGEYVNTNYGYVPSGLTDEPTYSSFSIFLTRGDGKVFGGVVQGKVKAAGDILITATLSNKSKSFRGGHHHLKYSRI 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1196g00001 163 Pfam Plants and Prokaryotes Conserved (PCC) domain 27 143 IPR005175 -
Vivi1196g00001 163 Gene3D - 25 159 - -
Vivi1196g00001 163 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 146 IPR014476 GO:0003680
Vivi1196g00001 163 ProSiteProfiles PPC domain profile profile. 21 163 IPR005175 -
Vivi1196g00001 163 SUPERFAMILY AF0104/ALDC/Ptd012-like 23 142 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1196g00001 3 148 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.000 4.78e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1196g00001 - - vvo:131640436 274.248