Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1192g00003 ATGCTTGCAAAGATGAACATGTTGATTCTTTCATGTCATAGTTTTCAGATTCTATTTGCTCTTGGTGTGCTTTTCATGTTAACTCATATTGAAGCTTCTTCTAGCTCAAAGGTTGACCACCTTCCTGGTTTTCAAGGACCACTTCCATTTGAACTTGAAACCGGGTATGTGGGGTTAGGGGAAACTGATGATGACATGCAAGTGTTCTATTATTTCATCAAGTCAGAGAATAATCCTAAAAAAGATCCTCTTATGCTTTGGTTAACTGGTGGCCCTGGTTGTTCTTCTTTTTCCGGTCTTGTCGATCAAATAGGTCCGTTTGCATTTGAAAAAAAGGAGTACGACGGGAGCGTGCCTAGTTTGGTTTCGAGGCCACAATCTTGGACTAAGCTAAGCAGCATTATTTTTGTTGATTTGCCCTTTGGAACTGGTTTCTCGTATGCTAAAAATGTCACTGCTCATCGAAGCGATTGGAAACTAGTTCATCATGTTCATCAATTTCTTAGGAAGTGGCTGATCGATCACTCTGAATTTCTTTCAAATGAATTCTACATGGGAGCTGATTCATACTCTGGCATTCCTGTACCAGCCATTGTTCAAGAAATTTCAAATGGAAATGAAAAAGGTCTCAAACCGTTGATAAACCTTCAGGGATATCTACTAGGAAATCCCATGACAACTTTCGAAGAAATCAATTATCACATTCCATATGCTCATGGAATGGGACTCATTTCTAATGAACTCTATGCGTCACTGGAGAGAAATTGTAAAGGAGAATATATTGATGTAGATTCTGAAAACGAGTTATGTTTAAGAGATCTCGAATCCTTTGACGAGATTTATAGTTTTTACCTAGCAACTAAATGGGCCAATGATCATAATGTTCGTAAGGCACTTCATATTCGAGAGGGAACCATAGGGAAATGGGAACGCTGTTACACTACGGATTTTGAGGAAGATATCCATGGTAGCTTTGAGTTTCATGTAAACCTAAGCAAGAAAGGATACCGCTCTTTGATATACAACGGGGATCATGATTTAGTTGTTCCTTTTACATCTACTCAAGCTTGGATAAGAAATCTAAACTACTCCATTGTGGATGATTGGAGGCCATGGTTTGTAAATGACCAAGTTGGAGGATACACAAGGACTTATTCAAATCGAATGACATTTGCAACCGTGAAGGGTTCAGGTCATACAGCACCTGAGTACACTCCTGAGCAATGCTTTGTCATGTTTAGTAGATGGATATCTAATTTACCTTTGTAA 1269 0.3885 MLAKMNMLILSCHSFQILFALGVLFMLTHIEASSSSKVDHLPGFQGPLPFELETGYVGLGETDDDMQVFYYFIKSENNPKKDPLMLWLTGGPGCSSFSGLVDQIGPFAFEKKEYDGSVPSLVSRPQSWTKLSSIIFVDLPFGTGFSYAKNVTAHRSDWKLVHHVHQFLRKWLIDHSEFLSNEFYMGADSYSGIPVPAIVQEISNGNEKGLKPLINLQGYLLGNPMTTFEEINYHIPYAHGMGLISNELYASLERNCKGEYIDVDSENELCLRDLESFDEIYSFYLATKWANDHNVRKALHIREGTIGKWERCYTTDFEEDIHGSFEFHVNLSKKGYRSLIYNGDHDLVVPFTSTQAWIRNLNYSIVDDWRPWFVNDQVGGYTRTYSNRMTFATVKGSGHTAPEYTPEQCFVMFSRWISNLPL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1192g00003 422 SUPERFAMILY alpha/beta-Hydrolases 38 421 IPR029058 -
Vivi1192g00003 422 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Vivi1192g00003 422 PRINTS Carboxypeptidase C serine protease (S10) family signature 389 402 IPR001563 GO:0004185|GO:0006508
Vivi1192g00003 422 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Vivi1192g00003 422 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Vivi1192g00003 422 FunFam Carboxypeptidase 325 419 - -
Vivi1192g00003 422 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 406 IPR001563 GO:0004185|GO:0006508
Vivi1192g00003 422 Gene3D alpha/beta hydrolase 31 422 IPR029058 -
Vivi1192g00003 422 FunFam Serine carboxypeptidase-like 19 31 289 - -
Vivi1192g00003 422 FunFam Carboxypeptidase 279 421 - -
Vivi1192g00003 422 Pfam Serine carboxypeptidase 283 419 IPR001563 GO:0004185|GO:0006508
Vivi1192g00003 422 Pfam Serine carboxypeptidase 42 281 IPR001563 GO:0004185|GO:0006508
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1192g00003 32 61 Calmodulin-binding Proteins AT2G22960 66.667 1.06e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1192g00003 K16296 - tpra:123922058 686.797