Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1187g00006 ATGGCGACGGAGAACACTGCAACACCAAACCCTAGCCACGGAGAACGGCCAAAAGTGGTGGTTATAACCGGCCCAACTGGTTCCGGAAAGTCAAAGCTAGCCGTCGATTTGGCCTCCCACTTCCCCCTCGAAGTAATCAACGCCGATTCCATGCAAGTCTACACCGGCCTCGACATTCTCACCAACAAGCTCCCCTTCTCCGAACAAAATGGAGTGCCGCACCATCTATTGGGTACCGTTAACCCAAACACTGAATTCACTGCCAAAGCTTTTCGCGATTCCGCTATTCCCATCATTGATGCCATATTGTCTCGAAATCACTTACCAGTTATAGTTGGTGGTACTAATTATTATATACAGGCTCTTGTGAGTTTGTTTCTCTTAGATGACTCGACAGATGATTTGAACGAAAGCAATTTGGGTGACTCACCTGGTATCACAGGGTATGATAATAGTATTGTTGCTGAAAACGGAGGTTCTAGCAACAGTTATGATTTGCTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCATCCAAATAACCATAGAAAGATAAACCACTACATTAGTTTGTACTTTCGTACCGGTGTTCTTCCCAGCAAAGTCTTTCAAGGACAGGCAGCAGAGAAGTGGGGTCAAGCTGATAACTTAAGATATGATTGTTGTTTTATAAGTGTAGATGCATCTCTCCCGGTATTGGACAGATATGTGGAGCAGAGGGTAGATCACATGATGGATGCAGGATTACTCAATGAAGTCTATGACATTTACTCTATGAATGCAGATTATACCAGGGGTTTGCGGCAAGCCATTGGTGTCCGTGAATTTGAGCATCTTCTTCAAACTTGTGTTTTCAAAAAGAGAAATCAGAAAGAGGAGGAGTTAACTGATGGAGCGAGCTTACAAAATGGCGAGCCAGTTCTTGATGGAAATTTAATGGAGTGGTTTAGATCTTCCTCTGATACTAAATCCATAAATCTTTTGGAAGAAGCAATTGAGAAAGTAAAGGTTAATACCAGGAGACTTGTTCGCCGTCAGAAGAGGATGCTTAGTCGACTTCAAACATTGTTTGGTTGGGACATACACTATGTTGATTCCACGGATTCAATATCGAGTCGATCAAATGATGTATGGAATAGCCAAGTGGTTGAAACTGCCATGAAGATAGTGACATCTTTCCTTAGTCAGAATGGTAACTTGTCGACGTCAAATGGCAATGGGATGAAAACAATCCAAAGGGACCTCTGGACTCAGTACACATGCAAGGCCTGCGGTGATCGTGTTCTTCGAGGAATACATGAATGGGAAGAACACAAACGCGGTCGTGGGCATCGCAAACGTATTTCTAGTCTCAAGAGCAAGGCAAAATATCTTAGTTTTGTGGAGCAGAAGCCCGAGCCATCCGAGTGCTAA 1416 0.4336 MATENTATPNPSHGERPKVVVITGPTGSGKSKLAVDLASHFPLEVINADSMQVYTGLDILTNKLPFSEQNGVPHHLLGTVNPNTEFTAKAFRDSAIPIIDAILSRNHLPVIVGGTNYYIQALVSLFLLDDSTDDLNESNLGDSPGITGYDNSIVAENGGSSNSYDLLKDIDPVAANRIHPNNHRKINHYISLYFRTGVLPSKVFQGQAAEKWGQADNLRYDCCFISVDASLPVLDRYVEQRVDHMMDAGLLNEVYDIYSMNADYTRGLRQAIGVREFEHLLQTCVFKKRNQKEEELTDGASLQNGEPVLDGNLMEWFRSSSDTKSINLLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWDIHYVDSTDSISSRSNDVWNSQVVETAMKIVTSFLSQNGNLSTSNGNGMKTIQRDLWTQYTCKACGDRVLRGIHEWEEHKRGRGHRKRISSLKSKAKYLSFVEQKPEPSEC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1187g00006 471 Gene3D - 17 417 IPR027417 -
Vivi1187g00006 471 Hamap tRNA dimethylallyltransferase [miaA]. 19 392 IPR018022 GO:0008033
Vivi1187g00006 471 Gene3D - 150 208 - -
Vivi1187g00006 471 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 19 285 IPR018022 GO:0008033
Vivi1187g00006 471 Coils Coil 326 346 - -
Vivi1187g00006 471 Gene3D Classic Zinc Finger 418 461 - -
Vivi1187g00006 471 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 17 395 IPR039657 -
Vivi1187g00006 471 FunFam tRNA dimethylallyltransferase 415 458 - -
Vivi1187g00006 471 Pfam IPP transferase 52 349 - -
Vivi1187g00006 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 260 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1187g00006 22 467 C2H2 Transcription Factor Family AT2G27760 56.140 5.84e-171 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1187g00006 K00791 - gmx:100792690 705.671