Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1187g00001 ATGGTGAAGACCAACGTGGAACAACAACCTGCGGCGGAACGAAGTGATTCGGTTTACCGAGGAGTGAGGAAGAGGAAATGGGGGAAATATGTGTCCGAAATCAGACTACCGAACAGCCGTCAGAGAATATGGTTGGGCTCTTATGACTCTGCTGAGAAGGCGGCGCGTGCATTCGACGCGGCTATGTTTTGCTTACGTGGCAGTGGTGCTAGGTTTAACTTTCCCGGTAATATTCCGGAGATTCCTGGAGGAAGGTCTATGACTCCTTCTCAGATTCAGGCTGCGGCAGCCCGTTTTGCGAATTCGTATGTTCATGATTCGGATCCGGGTCAACCCGATAATAATGCCGTGGAGGTGGAGTCTTCTTCATCGGAGGGAGCTGCATTGTTGATTCCTATGGAATCAGAATCACAGTCTCCGGCTGTTTCGGATTCGACATTTCAGACGGAGTGTGATTCGAAGCAAAACGGGTTGTTTTCGGATTTGTTTGCGGTAAACGGGTCGAGTAATATCGAACCCGATTACTCAAATTTTCCGAGTTTTGATGATTTTGGAGGAGATTTTTATATCCCGGAGTTTCCTAATTATGATTATGGAGAAGAGAATTTGGATGGATTAATAATTAACGATACTTTTTTATGGAATTACTAA 651 0.4562 MVKTNVEQQPAAERSDSVYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGARFNFPGNIPEIPGGRSMTPSQIQAAAARFANSYVHDSDPGQPDNNAVEVESSSSEGAALLIPMESESQSPAVSDSTFQTECDSKQNGLFSDLFAVNGSSNIEPDYSNFPSFDDFGGDFYIPEFPNYDYGEENLDGLIINDTFLWNY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1187g00001 216 PIRSF PTI6 111 188 IPR017392 GO:0003700
Vivi1187g00001 216 PIRSF PTI6 3 97 IPR017392 GO:0003700
Vivi1187g00001 216 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Vivi1187g00001 216 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vivi1187g00001 216 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vivi1187g00001 216 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Vivi1187g00001 216 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Vivi1187g00001 216 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Vivi1187g00001 216 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Vivi1187g00001 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 137 - -
Vivi1187g00001 216 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Vivi1187g00001 216 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1187g00001 17 216 AP2-EREBP Transcription Factor Family AT1G19210 46.341 3.79e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1187g00001 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1187g00001 - - gmx:100802508 250.366