LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1186g00008	ATGGAAGCTAGATTGGGTGCTGAGGGTTATAATTTTTATGGTGTTGTTGGTGGTTCATCTGATTTGAGTAGTATGGGGAAGAGGACTAGAGAGTGGAGTTTGAATGATTGGAGATGGGATGGTGATTTGTTTATAGCTAGCCGTGTGAATCCGGTGCCGGTGGATAGTCTGAGAGTGGGACAACAGTTTTTCCCTATTGGGTCTGGGATCCCCGTGGCTGGGGGTTCCTCTAACACCTCTTCTTCATGCTCTGAGGAAGGAGATGTTGAGAATCATAAAAGGAACAAGGAAGGGGAGAGGAAAAGGAGAGTTATTGTTTTGGAAGATGATGGTTTGAATGAGGAAGCTGGTGCCCTTAGCTTAAATCTTGCAGGACGTGCTTCACCTGTGGTGGAAAGGGAGATTGCAAGCTGGGATGGTATGAGTGGAAAGAAAAGCAAAGTAGCTGGAGGTACTTCGAATCGAGCTGTTTGTCAGGTTAAAGATTGTGGTGCAGATCTGAGCAGAGGTAAGGATTATCACAGACGGCATAAAGTTTGTGAGATGCATTCTAAGGCTAGTAAGGCACTTGTGGGGAATGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACTTACTTCAAGAGTTCGATGAAGGAAAGAGAAGCTGTCGAAGACGCTTGGCTGGCCATAATAAACGGAGAAGGAAAACAAATCATGAAGCTGTTCCTAATGGAAGTCCTACAAATGATGATCAGACCAGTAGTTATCTCTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGAACAGCCTACAGATCATGATCTTCTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATGATGAGCAAGGGAGCAAGAATTTGTCAAACCTTTTGCAGGAACAAGAGATTTTGTTGAGAGAACGGGATTCTTCTAGGAAGTCAGAGATGGTGTCAGCTTTATTCTCCAATGGTTCTCAAGGCTCTCCAACTGTTATAGCACAACACCAAACTTTATCTATGAATAAAAGGCAACAAGAAATGATGCATGCTCATGATGTTAGCACCGTTGATCATCAGCTCGTATCTTCAATAAAGCCCAGCATTTCAAACAGTCCTCCGATTTACTCAGAAGTTAGAGATAGTAGTGCACAAATAAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGCATGGAAGATCTAGAAATATTACCAGTCTCTACAAATATTGGCACTAGCTCTGTTGATTATCCATGGACACAACACGATTCTCATCAGTCAAGTCCACCTCAAGCAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGTGGAGAACCTCAGAGCCGTACAGACCGGATTGTTTTTAAGCTCTTTGGTAAAGAGCCAAATGAATTTCCTCTTGTACTTAGAACACAGATTCTTGATTGGTTATCCCACAGTCCTACCGATATTGAAAGCTACATACGACCTGGTTGTATTGTTTTGACTATATATCTGCGTCAGGCTGAGGTTGTGTGGGATGATCTGTGCTGTGATTTGACTTCCAGTTTGAGTAAGCTGCTGGATGTCTCAGATGATGCATTTTGGAGAAGTGGATGGGTTCATTTCAGGGTGCAGCATCAAATGGCATTCATTTTCAATGGTCAAGTTGTAATAGATACATCACTGCCTTTTAGAAGCAGAAATTACAGCAAGATTTGGACTGTTAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCAGTTAAAGGTGTCAACCTAATGCGCCCTGCCACAAGGTTAATGTGTGCTTTAGAAGGAAACTATCTGGTGTGTGAAGATACTCAAGAGTCAACAGATCAATACGCCAAGGAGCTCGATGAACTTCAGTGCATTCAATTTTCTTGTTCAGTCCCTGTGACGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTCATAGTTGCAGAGGAGGATGTTTGCTCAGAGATTCGTGTGCTTGAGCCTTTACTAGAACTAAGTGAAACTGCGCCAGATATTGAAGGGACTGGAAAAATTAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGATGGCTTCTTCACAGAAGTCAATTGAAATATAGGGTGGTTCACTTGAACTCTGATGTAGATCTCTTTCCATTAGAACGGTTCACTTGGCTTATGGAGTTTTCCATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTGTTGAACATACTGCTTGATGAAACTGTGAACAAAGGAGATCACCCTACCATGTATCAAGCACTTACAGAGATGGGCCTCCTTCATAGAGCCGTAAGGAGAAATAGCAAGCAGTTAGTGGAGTTGCTTTTGAGATATGTTCCTAAAAATACATCTGATGAACTAAGACCCAAAGTCAAGGCACTAGGTGATGGAGAGACTCTTAGCTTCTTGTTTAGACCGAATGCTGTTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCGGGAAAAGATGGTTCTGAGGATGTACTGGATGCTCTTACTAATGATCCTAGCATGGTGGGAATTGAAGCATGGAAGAATGCCCGTGACAGCACAGGCTCCACACCTGAAGATTATGCCCGATTACGTGGCCATTATACTTACATTCACTTGGTACAGAGAAAAATTAACAAGAGACAAGTAGCAGCTCACGTGGTAGTCGAGATCCCTAGCAATCAGACAGAGGGCAATACAAACCAGAAACAGAAGCAAATCGAGTCTGTCACTGGATTTGAGATTGGAAAAGCTGAAGTAAAACGTGGTCAAGGGCATTGTAAACTTTGTGATACTAAAATTTCTTGTAGAACTGCAGTAGGGAGGTCTATGGTATACAGACCTGCAATGCTCTCTATGGTGGCCATAGCAGCAGTCTGTGTTTGTGTGGCTCTTCTGTTCAAAAGCTCACCTGAAGTTCTATACATGTTCCGTCCCTTCAGATGGGAATCATTGGAGTTCGGGACTAGTTAA	3051	0.4235	MEARLGAEGYNFYGVVGGSSDLSSMGKRTREWSLNDWRWDGDLFIASRVNPVPVDSLRVGQQFFPIGSGIPVAGGSSNTSSSCSEEGDVENHKRNKEGERKRRVIVLEDDGLNEEAGALSLNLAGRASPVVEREIASWDGMSGKKSKVAGGTSNRAVCQVKDCGADLSRGKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNHEAVPNGSPTNDDQTSSYLLISLLKILSNMHSDRSEQPTDHDLLTHLLRSLASQNDEQGSKNLSNLLQEQEILLRERDSSRKSEMVSALFSNGSQGSPTVIAQHQTLSMNKRQQEMMHAHDVSTVDHQLVSSIKPSISNSPPIYSEVRDSSAQIKMNNFDLNDIYIDSDDGMEDLEILPVSTNIGTSSVDYPWTQHDSHQSSPPQASGNSDSASAQSPSSSSGEPQSRTDRIVFKLFGKEPNEFPLVLRTQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEVVWDDLCCDLTSSLSKLLDVSDDAFWRSGWVHFRVQHQMAFIFNGQVVIDTSLPFRSRNYSKIWTVSPIAVPASKRAQFSVKGVNLMRPATRLMCALEGNYLVCEDTQESTDQYAKELDELQCIQFSCSVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEIRVLEPLLELSETAPDIEGTGKIKAKSQAMDFIHEMGWLLHRSQLKYRVVHLNSDVDLFPLERFTWLMEFSMDHDWCAVVKKLLNILLDETVNKGDHPTMYQALTEMGLLHRAVRRNSKQLVELLLRYVPKNTSDELRPKVKALGDGETLSFLFRPNAVGPAGLTPLHIAAGKDGSEDVLDALTNDPSMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQRKINKRQVAAHVVVEIPSNQTEGNTNQKQKQIESVTGFEIGKAEVKRGQGHCKLCDTKISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLEFGTS	1016

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1186g00008	1016	MobiDBLite	consensus disorder prediction	222	248	-	-
	Vivi1186g00008	1016	MobiDBLite	consensus disorder prediction	74	97	-	-
	Vivi1186g00008	1016	SUPERFAMILY	Ankyrin repeat	729	899	IPR036770	-
	Vivi1186g00008	1016	MobiDBLite	consensus disorder prediction	422	460	-	-
	Vivi1186g00008	1016	Pfam	SBP domain	158	231	IPR004333	GO:0003677
	Vivi1186g00008	1016	Gene3D	-	149	219	IPR036893	GO:0003677\|GO:0005634
	Vivi1186g00008	1016	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	73	903	IPR044817	GO:0003677
	Vivi1186g00008	1016	FunFam	Squamosa promoter-binding-like protein 14	149	219	-	-
	Vivi1186g00008	1016	SUPERFAMILY	SBT domain	156	236	IPR036893	GO:0003677\|GO:0005634
	Vivi1186g00008	1016	Gene3D	-	711	906	IPR036770	-
	Vivi1186g00008	1016	ProSiteProfiles	Zinc finger SBP-type profile.	155	232	IPR004333	GO:0003677

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1186g00008	1	1016	SBP-box Gene Family	AT3G60030	54.457	0.0	975

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Vivi1186g00008		SBP	1.3e-28	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1186g00008	-		-	vvo:131643968	1922.52