Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1186g00003 ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAAAGCGTGGGGGTGTTGGATGTGAAGTATTTTCCGAATAAAGGAAGCAATATTCATGAGATCGGTGATGCAGATCGAGTTCGTGCTTCTGAATCAGTTTCCGCTGAGTTGCTTACTACAAAAGAAGATGTTAAGACTGCAGACATAATCTCAGAAGCCGCAGTTCTGCAATTTGTACCCTGCATACGTTCTGGTAGTTTTTCCGACATTGGGCCACGAAGATACATGGAAGATGAACATATAAGGATAGATGATTTGACTTCTCATCTAGGATCACTATATAAATTTCCTAAGCCAAGTGCCTTTTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCAGCAGCTTATATAAGAAAAAATGTTATAAAATTCTTCTTTGAGGATGTCAATTTCCCTCAGACATCTGAAGTTGATAACATATTTTTACAAGACGTAGAGAATTCCCTCAGAAAGGCTTTTCTTTTGGCGGACTCGGCTATGGCTGATGATTGCAGTGTGAACACTTCTTCAGGGACCACAGCTCTTACTGCTATGATATTTGGAAGACTTCTAATGGTGGCTAATGCTGGTGACTGTCGAGCAGTTCTCAGTCGAAAAGGAGAGGCCATTGATATGTCTCAAGATCACCGGCCTATTTATCCATCAGAGCGGAGACGAGTTGAAGAATTGGGCGGCTATGTAGAAGATGGTTACCTAAATGGTGTTTTATCAGTTACCAGAGCATTAGGGGACTGGGACATGAAGTTACCTAGGGGTGTTCCCTCACCATTGATTGCAGAGCCCGAGTTCCGTCAAATGGTTCTAACAGACGACGACGAATTCCTCATCATAGGATGTGATGGCATCTGGGATGTGATGTCAAGCCAGCATGCCGTTAGCCTTGTACGTAAAGGTTTGAGGAGGCACGATGACCCAGATAAGTGCGCCAGGGATCTAGTTATGGAGGCATTACGACTCAATACATTTGACAATCTTACAGTGATCATAATATGTCTCTCTTCCATTGACCATGGGGAGTCAGACCCATCCCCACCCCCCCAACGGAAACTGAGATGCTGCAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAATTTGCTGGAAGGAAGTGCTAGCAAGTGA 1155 0.4459 MVAEAEVVCQQSVGVLDVKYFPNKGSNIHEIGDADRVRASESVSAELLTTKEDVKTADIISEAAVLQFVPCIRSGSFSDIGPRRYMEDEHIRIDDLTSHLGSLYKFPKPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVNFPQTSEVDNIFLQDVENSLRKAFLLADSAMADDCSVNTSSGTTALTAMIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYPSERRRVEELGGYVEDGYLNGVLSVTRALGDWDMKLPRGVPSPLIAEPEFRQMVLTDDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPDKCARDLVMEALRLNTFDNLTVIIICLSSIDHGESDPSPPPQRKLRCCSLSAEALCSLRNLLEGSASK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1186g00003 384 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169
Vivi1186g00003 384 Gene3D - 57 349 IPR036457 -
Vivi1186g00003 384 PANTHER PROTEIN PHOSPHATASE 2C 62 341 IPR015655 GO:0004722|GO:0006470
Vivi1186g00003 384 CDD PP2Cc 72 343 IPR001932 -
Vivi1186g00003 384 ProSiteProfiles PPM-type phosphatase domain profile. 73 343 IPR001932 -
Vivi1186g00003 384 SMART PP2C_4 63 341 IPR001932 -
Vivi1186g00003 384 FunFam Probable protein phosphatase 2C 22 56 346 - -
Vivi1186g00003 384 Pfam Protein phosphatase 2C 83 335 IPR001932 -
Vivi1186g00003 384 SUPERFAMILY PP2C-like 66 344 IPR036457 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1186g00003 86 380 PP2C-type Phosphatase Gene Family AT3G62260 68.919 2.63e-153 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vivi1186g00003 PP2C 8.7e-64 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1186g00003 K14803 - gmx:100819791 686.797