Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1186g00002 ATGGCAACAGCGGGTGTAGCACCTGCTTCTGGATTAAGAGATGTAAATGCAAGTTCAGTAATTGCTGCTGATAGGTTGCCTGAGGAGATTCTTGGCATGAGAATTAAGGATGACAAGGAAATGGAAGCAAGTGTGGTAGATGGAAGTAGTACTGAAGCGGGACATGTAATTGTCACTACCATTGGTGGTAAAAATGGTCAGCCAAAGCAGACAATAAGTTACATGGCTGAGCGTGCTGTTGGACAAGGGTCATTTGGTATAGTTTTCCAGGCAAAATGCTTGGAGACAGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTACAAACAATGCGCCTTTTGGACCACCCTAATGTTGTAACTTTGAAGCATTGTTTCTTTTCAACAACTGAAAAAGACGAGCTATATCTTAACTTGGTACTTGAGTTTGTTCCTGAGACTGTCCATCGTGTGATCAGACACTACAGCAAAATGAATCAGAGGATGCCATTGATATATGTAAAACTTTATTCTTACCAGATATGCAGAGCTCTAGCTTATATACATAACTGTGTTGGAGTGTCTCATAGGGACATCAAACCTCAAAATCTACTGGTCAATCCTCACACCCACCAGCTGAAGCTTTGTGACTTCGGGAGTGCAAAAGTCCTGGTCAAAGGTGAACCAAACATATCTTACATCTGTTCTAGATATTACCGAGCTCCCGAGCTTATATTTGGCGCAACTGAGTACACCACAGCTATTGACATTTGGTCAGCTGGATGTGTACTCGGAGAACTATTGCTTGGCCAGCCTCTCTTTCCTGGTGCGAGTGGAGTTGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGTATGAATCCTAATTACACCGAGTTCAAATTCCCACAAATCAAAGCTCATCCATGGCACAAGATCTTTCGGAAGCGTATGCCACCTGAGGCTGTGGATCTCGTCTCAAGACTACTGCAATACTCTCCTAATCTTCGAAGCACAGCTTTGGAGGCTCTAGTTCATCCATTCTTTGATGAATTGCGTGATCCAAATACCCGCCTACCAAATGGGCGTCATCTTCCTCCTTTATTTAACTTCAAAGCGAATGAGCTTAAGGGAGTGCCTGCCGAAATGCTGGTGAAACTGATTCCTTCGCACGCAAGAAAGCAATCTGCCTTGTTTGTGTCATAG 1233 0.4323 MATAGVAPASGLRDVNASSVIAADRLPEEILGMRIKDDKEMEASVVDGSSTEAGHVIVTTIGGKNGQPKQTISYMAERAVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEFVPETVHRVIRHYSKMNQRMPLIYVKLYSYQICRALAYIHNCVGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLIPSHARKQSALFVS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1186g00002 410 FunFam Glycogen synthase kinase-3 beta 58 153 - -
Vivi1186g00002 410 SUPERFAMILY Protein kinase-like (PK-like) 73 382 IPR011009 -
Vivi1186g00002 410 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Vivi1186g00002 410 Gene3D Transferase(Phosphotransferase) domain 1 154 402 - -
Vivi1186g00002 410 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1186g00002 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vivi1186g00002 410 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 38 404 - -
Vivi1186g00002 410 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Vivi1186g00002 410 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1186g00002 410 CDD STKc_GSK3 69 361 IPR039192 -
Vivi1186g00002 410 FunFam Shaggy-related protein kinase kappa 154 402 - -
Vivi1186g00002 410 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1186g00002 78 365 MAP Kinase Gene Family AT4G01370 36.364 1.95e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vivi1186g00002 Pkinase 5.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1186g00002 K27413 - gmx:100788046 772.696