Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi117g00002 ATGCCTCAATCGCCGTCTCCGTCTCTCTTCATCTTGTTCACGACCAATTTCTCCTTCATAAACAGCGCCAATTTCTCCTCTTCTGATTTTTCAATCGGTGGTCAGATCTTACCTACTTCTAATCTGAGAGTCTACACTTTCGCCGAATTGAAAGCTTCTACCAAGAATTTCAAACCTGAAACACTTCTCGGTGAAGGAGGTTTTGGAAAAGTCTACAGAGGTTGGCTTGATGGAATCACCATTGCCGTCAAAAAATTGAACTCCGAAAGTTTACAAGGTCTCCAGGAATGGCAGTCAGAGATACATTTTCTAGGTAGACTTTACCATCCTAACCTTGTTAAACTCTTGGGATATTGTTATGAGGATACAGAGCTTCTTCTTGTCTACGAATACATGCAGAAGGGTAGTTTGGAAAATCACCTCTTTGGAAGAGGTGTTGTTGTTCAACCACTTCCTTGGGAGCTGAGGCTTAAGATAGCAATCGGAGCAGCTACCAGACTTTCGTTCTTGCATACACCAGATAGAGAAATTATTTACAGAGATTTTAAGGCCTCTAATATATTGCTTGATGGGTCCTATAATGCCAAGATATCAGATTTTGGGTTGGCAAAACTGGGTCCTTCGGCTAGTCAATCACATTTGTCTACAACGGTGATGGGAACACCAGGTTATGCAGCTCCTGAATATATGCAAACAGGGCATCTATATGTAAATAGTGATGTGTATGGTTTTGGAGTTGTTTTGGTTGAGATACTGACGGGCTTACGGGCGATAGATCTCAACCGCCCAAGCGGGTATCACAGTCTAACGGATTGGATCAAACCGCACCTACAGGAAAGAAGAAAATTGAAGAAGATTATGGATCCTCAATTAGGAGGAAAGTATCCAATCAAAGCTGCACTTACTATATCTAAGGTTGCTTCTAGGTGTCTTGCACCCGAGCCCAAAATGCGCCCATCCATGAAGGATGTTTTGGAGATCTTGAAAGGAACTCAAGCTTCCACTGACAAAGACGTCGAGGTTAGGGGTCAAAATTAA 1038 0.4249 MPQSPSPSLFILFTTNFSFINSANFSSSDFSIGGQILPTSNLRVYTFAELKASTKNFKPETLLGEGGFGKVYRGWLDGITIAVKKLNSESLQGLQEWQSEIHFLGRLYHPNLVKLLGYCYEDTELLLVYEYMQKGSLENHLFGRGVVVQPLPWELRLKIAIGAATRLSFLHTPDREIIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHLSTTVMGTPGYAAPEYMQTGHLYVNSDVYGFGVVLVEILTGLRAIDLNRPSGYHSLTDWIKPHLQERRKLKKIMDPQLGGKYPIKAALTISKVASRCLAPEPKMRPSMKDVLEILKGTQASTDKDVEVRGQN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi117g00002 345 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 132 341 - -
Vivi117g00002 345 SUPERFAMILY Protein kinase-like (PK-like) 33 328 IPR011009 -
Vivi117g00002 345 ProSiteProfiles Protein kinase domain profile. 57 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi117g00002 345 Pfam Protein kinase domain 60 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi117g00002 345 CDD STKc_IRAK 63 330 - -
Vivi117g00002 345 FunFam Serine/threonine-protein kinase BIK1 24 131 - -
Vivi117g00002 345 Gene3D Transferase(Phosphotransferase) domain 1 132 344 - -
Vivi117g00002 345 PIRSF ILK 34 342 - -
Vivi117g00002 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Vivi117g00002 345 PANTHER OS01G0588500 PROTEIN-RELATED 35 331 - -
Vivi117g00002 345 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Vivi117g00002 345 Gene3D Phosphorylase Kinase; domain 1 33 131 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi117g00002 39 328 Glycoside Hydrolase AT3G07070 48.814 1.35e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi117g00002 Pkinase 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi117g00002 - - mtr:11430234 552.747