Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1177g00004 ATGATATCTCTGATTCATTCATGTTCTTTGATTGCAACAATAATAATTGTTGTTACAACAAAAATCATTGTAGGAGTAAATTCCTTTCCAGAATCTGATAAGATAAGCAGTTTACCTCAGCAGCCAAAAGTGGAATTCCAGCAATATGCTGGTTACATTACAGTTGATAAAGTCCAGAAAAGATCTTTGTTTTATTACTTTGTTGAAGCAGAAGTTGAACCGGCTTCTAAACCAGTTGTGCTTTGGTTAAATGGAGGGCCTGGTTGTTCATCTGTTGGAGTTGGTGCTTTTGTGGAGCATGGACCATTCAAACCAACGCAAAATGGCCTTATTAAAAATGATTACAGTTGGAACAAAGAGGCAAATATTTTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCCTATTCTGCCAATGAATCATTCTATGACTATGTCAATGATGAAATGACAGCAAAGGATAACCTTGTTTTTCTACAACATTGGTTCACTGAATTTCAAGAGTACAAAAATAATGATTTCTTTATCACTGGGGAGAGCTATGCAGGTCACTATGCACCTCAACTTGCACAACTCATTCTTCGAAGCAAAAGCAAAAGCAAAATCAATCTCAAGGGAATAGCAATAGGGAATCCTCTTCTTGAAACCAACACAGATTTCAACTCCAGAGCTGAGTTTATCTGGTCTCATGGACTAATATCAGATTCAACCTATGAATCCTTCACAAAAATATGCAACTATTCCCAAATTAGAAGAGAATATCAAAATGGAGCACTTACTCCCATTTGTGCAAGAGTGAATAGGCTAGTCTCAATGGAGTTGAGTAGATATGTTGATCCGTACGATGTTACTCTTGATATCTGTCTGCCATCTGAAAAACAACAGGCATATAGGCTAACTCAACTGCAAGAGGGAGATAAGATAGATGTTTGTGTGGAAGATGAAACAATCACATACTTGAATAGAAAAGAAGTTCAAGAAGCTCTCCATGCTAAGCTTGTAGGGATCATCACCACATGGTTTACTTGTAGTCAAGTTCTCAAATATGACATGCGAAATCTAGAGATCCCAACTATATCAATTCTAGGGACACTGGTTAAATCAGGTGTAAGAGTTCTAGTATTCAGTGGAGATCAAGATTCAGTTATACCCTTAACCGGAACGCGTTCTTTAGTGAATGGATTAGCCAAGGACATTGGGTTGAACACAACAGAGAGCTATAGAGCTTGGTTTAATGAAAGACAGATTGGTGGATGGACACAAATATATGGTAGTAACATTTTATTGTTTGCAACCATAAGAGGAGCAGCTCATGAGGCTCCATTTTCACAACCAGGGAGATCATTGGTGTTGTTTAAGGCATTTTTGGAAGGAAAATCACTTCCAACTATTGTCTAA 1398 0.377 MISLIHSCSLIATIIIVVTTKIIVGVNSFPESDKISSLPQQPKVEFQQYAGYITVDKVQKRSLFYYFVEAEVEPASKPVVLWLNGGPGCSSVGVGAFVEHGPFKPTQNGLIKNDYSWNKEANILYLESPAGVGFSYSANESFYDYVNDEMTAKDNLVFLQHWFTEFQEYKNNDFFITGESYAGHYAPQLAQLILRSKSKSKINLKGIAIGNPLLETNTDFNSRAEFIWSHGLISDSTYESFTKICNYSQIRREYQNGALTPICARVNRLVSMELSRYVDPYDVTLDICLPSEKQQAYRLTQLQEGDKIDVCVEDETITYLNRKEVQEALHAKLVGIITTWFTCSQVLKYDMRNLEIPTISILGTLVKSGVRVLVFSGDQDSVIPLTGTRSLVNGLAKDIGLNTTESYRAWFNERQIGGWTQIYGSNILLFATIRGAAHEAPFSQPGRSLVLFKAFLEGKSLPTIV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1177g00004 465 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Vivi1177g00004 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Vivi1177g00004 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vivi1177g00004 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Vivi1177g00004 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 428 441 IPR001563 GO:0004185|GO:0006508
Vivi1177g00004 465 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 445 IPR001563 GO:0004185|GO:0006508
Vivi1177g00004 465 Gene3D alpha/beta hydrolase 30 289 IPR029058 -
Vivi1177g00004 465 SUPERFAMILY alpha/beta-Hydrolases 40 461 IPR029058 -
Vivi1177g00004 465 Pfam Serine carboxypeptidase 42 458 IPR001563 GO:0004185|GO:0006508
Vivi1177g00004 465 FunFam Carboxypeptidase 28 462 - -
Vivi1177g00004 465 Gene3D - 359 458 - -
Vivi1177g00004 465 Gene3D - 311 347 - -
Vivi1177g00004 465 FunFam Carboxypeptidase 358 458 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1177g00004 319 461 Calmodulin-binding Proteins AT2G22960 30.070 1.56e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1177g00004 K16297 - gmx:100805028 732.635