Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1173g00008 ATGGTAGCACCGATATCTGATAATGGAATCCGTAGTAGAAAGAAGTCATCAAGAGGACACCACAGGTTTGTAGGAGTTCGTCAAAGGCCGTCGGGGAGATGGGTGGCCGAGATCAAGGACTCTTTACAGAAAGTTAGGCTTTGGCTCGGAACATTTGACACGGCTGAAGAAGCGGCTCGTGCTTACGATACAGCTGCTAGAGCTTTGAGAGGTGCTAATGCTAGAACCAACTTTGAGTTGCCAGAATCTGCAACAAATGGAGGTGATGCTAAGCGTGGATCGGGTTCGGGTTCTAAGTTCGTGCTAGAGAATACCGAGCCTTTTTCTTTCGAAGATGTGAGTGATTCAGGCTCAGGTTCTGACGGTCTTCTTGGTGCACTCAAGGCAAAACTTTGTGATGGGAAAGAAGGGAAATTCTCATTTTCATTTCCTTCTGTTAGTACGGTTTCGAAATCAACACAAAACGGTTCTTGGAAGAAAGAATCATCATTACCACCATCATCATCAGCTACATATTGTCTCTCTCAGATGAATGAAACTCATGCTAACCCTAACACTATACCTAGTTCATTGAGTACTTCATCAAACACTTTTGCCAAGAGTTTGATTATCCCAAATCATGATCAAGAATTATGTCAAACTCAAACACCATCTATGACAAACATGTTATGGTCCAATGAAATCGAAAACCAATATCCTTGGCCTATTCAGATGAATCATGTTCTTCATGACAATAGTACTAGTACTGATCTTCTTGCATCTGCAAGTGTGTCGAATTTTCCGTGGCCGCTAATAGATTCGAATACTGACATGACATGTATAGATCAAGGGATGTTAAATAGTAACAGAAGTGATCAAATGAATATGATGAACATGCAGTTACCTCAAGTTGGTGGATCAAATACTGAAGGGCTTTGGACAATGGATCAGCAGCAGCAGCAGCAACAGTTTGTGCAATGTGAGGAGAATAATAGTTGGTTTGGTTCCGGTGGATCTTGGAATTCTTTTATCTATGTGCCTTCTGAGCTAGCTTGA 1035 0.4184 MVAPISDNGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEEAARAYDTAARALRGANARTNFELPESATNGGDAKRGSGSGSKFVLENTEPFSFEDVSDSGSGSDGLLGALKAKLCDGKEGKFSFSFPSVSTVSKSTQNGSWKKESSLPPSSSATYCLSQMNETHANPNTIPSSLSTSSNTFAKSLIIPNHDQELCQTQTPSMTNMLWSNEIENQYPWPIQMNHVLHDNSTSTDLLASASVSNFPWPLIDSNTDMTCIDQGMLNSNRSDQMNMMNMQLPQVGGSNTEGLWTMDQQQQQQQFVQCEENNSWFGSGGSWNSFIYVPSELA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1173g00008 344 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Vivi1173g00008 344 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Vivi1173g00008 344 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 230 - -
Vivi1173g00008 344 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vivi1173g00008 344 MobiDBLite consensus disorder prediction 147 171 - -
Vivi1173g00008 344 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Vivi1173g00008 344 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vivi1173g00008 344 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Vivi1173g00008 344 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Vivi1173g00008 344 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Vivi1173g00008 344 MobiDBLite consensus disorder prediction 1 25 - -
Vivi1173g00008 344 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1173g00008 11 78 AP2-EREBP Transcription Factor Family AT5G19790 69.118 1.75e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1173g00008 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1173g00008 - - vvo:131640287 625.165