Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1172g00011 ATGGAAGAAAACAACACCCTTCATGCCTCAGATTCAATTGATAAATCTAGGATTGTTGAAGCCAAACCTTTGCGTAGTTTAGCTCCTGTATTGCCTAATCATATTCAATCTTGTTTTCCTGCAAATTATCCATCTGGGTTTCCTCCATTTTGTTCATTTGAGAAACCCCAAGATATCCCTCTTCCAAAAGGAGCTCAGGAAATTTCTGTTGATACCGAAATAGCTGAGGAAATTCCCGTTTCTGGGAAAGAAACTCCTGTTGCTGCTAAAGTGACTCCAATTAGGTTCTACAAGAGTTCAGTTGATGAGGAAGTGAATCCACGAGCAAACGGAGATGTTAATTCGTTTCCAGAAGGGTTGAACGGCGATGAATTTGTTGATGATACACGGAAGCGAGGTGGGGAGAGTATACAGAATTGTAAAGAGTTTCTTAAACGGAAAAGGAATAAGAAAACTCGGGAGGCGGGTGTTGATGGTCAAACTAGTTCTAGTGTTGGTGTTAACCCGTCTCCAAATGATGAAGGTAATCGTGAATCGGTTAATCATGTGCTCATGATGTATGATTCGATTCGAAGAAGGCTTTGCCAGCTTGAGGATTCAAAGGAACTGAATAGTTCGCTTGCCATTAAGCGTGCGGATCTTAGAGCGAGCAATGCTTTGACGTGTAAAGGGATTAAAACGAATTTGAGGAGAAGAGCGGGAGCGGTGCCTGGGATTGAGGTTGGGGATATTTTCTTTTTTCGAATGGAGATGTGTCTTGTGGGTTTACATGGTCAATCGATGGGTGGAATTGATTATATGAATTTCAAGGACGGGTCGAAGGAAGATACTGTGGCGTTAAGTGTTGTTTCATCGGGAATGTATGGTGATGATACGGAGGATAATGATGTTTTAGTTTATAGTGGTCAAGGTGAGAATTTCAACAAGAAAGATAAGCATGTGACTGATCAGAAGCTCCAAAGGGGTAATCTTGCTTTGGACAGAAGTGCGCAGCGTCACGACGAAGTTAGAGTCATTCGGGGATTGAGAGATGCTGTGAGTAGAACAGCGAAAATCTATATGTATGATGGTTTGTATAAAATCCAAGATTCTTGGATTGAAAAAGGGAAATCTGGTGGTGGTATATTTAAGTATAAGTTAGTAAGGTTGCCTGGACAAAAAAGTGCTTTTGGTGCTTGGAAATTGGCTCAAAAGTGGAAAGGAGGTTCTGCTTCAAGGAATGGTTTTATTCTTGCTGACCTTTCCAATGGAGTTGAAAGTATTCCCGTATCACTTGTCAATGATGTTGATGATGAAAAAGGTCCTGCCTTTTTCACTTATTTCACGTCTCTCAAGAAACCGAAACCTTTTGGTTTAGTGCAGCCTTCATTTGGCTGCAATTGTAAAGCATGCATCCCTGGTGATTTTAACTGTTCTTGCATTCAAAGAAATGAAGGTGATTTTCCGTACACTGCAAATAGTATTCTAGTGAGTCGGAAGCCGCTGATTCATGAATGTGGCCCTATGTGTCGGTGTCTTCCCAACTGCAAAAATCGAGTATCGCAGACTGGGTTAAAGCCACACATGGAGGTTTTCAGAACAAAGGATAGAGGCTGGGGGCTTCGGACACTGGATCCTATTCGTGCCGGTAGCTTTATTTGCGAGTATGCAGGCGAAGTTATCGACAAAGCTAAGGTATCTCAGAATGATGAAGAAGATAATGATGAATATATTTTCGACACAAGCCGTATTTATCAACCATTCAAGTGGAATCATGATCCTAGCTTACTGGAAGAAGTAAGTTCAAATGTTTTGAGTGAAGATTATACTATACCATCTCCTCTCATTATAAGTGCCAAGAATGTGGGAAATGTGGGTAGATTCATGAACCATAGTTGCTCCCCAAATGTGTTTTGGCAGCCGGTACTATATGCAGAAAACAATCATTCCTTTCTCCACATTGCATTTTTCGCCCTTAAACATATTCCTCCTATGGCAGAGTTAACATATGATTATGGATTTGTCCTTGCTGGCCATGCCGAGGGTAGTAGTGCACTAAGAAGGAAAAATAAATGCCTGTGTGGATCAGAAAAGTGCCGTGGTTTCTTTGGTTGA 2094 0.4131 MEENNTLHASDSIDKSRIVEAKPLRSLAPVLPNHIQSCFPANYPSGFPPFCSFEKPQDIPLPKGAQEISVDTEIAEEIPVSGKETPVAAKVTPIRFYKSSVDEEVNPRANGDVNSFPEGLNGDEFVDDTRKRGGESIQNCKEFLKRKRNKKTREAGVDGQTSSSVGVNPSPNDEGNRESVNHVLMMYDSIRRRLCQLEDSKELNSSLAIKRADLRASNALTCKGIKTNLRRRAGAVPGIEVGDIFFFRMEMCLVGLHGQSMGGIDYMNFKDGSKEDTVALSVVSSGMYGDDTEDNDVLVYSGQGENFNKKDKHVTDQKLQRGNLALDRSAQRHDEVRVIRGLRDAVSRTAKIYMYDGLYKIQDSWIEKGKSGGGIFKYKLVRLPGQKSAFGAWKLAQKWKGGSASRNGFILADLSNGVESIPVSLVNDVDDEKGPAFFTYFTSLKKPKPFGLVQPSFGCNCKACIPGDFNCSCIQRNEGDFPYTANSILVSRKPLIHECGPMCRCLPNCKNRVSQTGLKPHMEVFRTKDRGWGLRTLDPIRAGSFICEYAGEVIDKAKVSQNDEEDNDEYIFDTSRIYQPFKWNHDPSLLEEVSSNVLSEDYTIPSPLIISAKNVGNVGRFMNHSCSPNVFWQPVLYAENNHSFLHIAFFALKHIPPMAELTYDYGFVLAGHAEGSSALRRKNKCLCGSEKCRGFFG 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1172g00011 697 SUPERFAMILY SET domain 403 672 IPR046341 -
Vivi1172g00011 697 Gene3D SET domain 403 696 IPR046341 -
Vivi1172g00011 697 Gene3D - 216 400 IPR036987 -
Vivi1172g00011 697 ProSiteProfiles Post-SET domain profile. 681 697 IPR003616 -
Vivi1172g00011 697 Pfam SAD/SRA domain 233 386 IPR003105 -
Vivi1172g00011 697 SMART set_7 520 672 IPR001214 GO:0005515
Vivi1172g00011 697 MobiDBLite consensus disorder prediction 106 179 - -
Vivi1172g00011 697 Pfam Pre-SET motif 415 512 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi1172g00011 697 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 66 697 IPR025794 GO:0016571
Vivi1172g00011 697 MobiDBLite consensus disorder prediction 123 155 - -
Vivi1172g00011 697 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 217 401 - -
Vivi1172g00011 697 ProSiteProfiles SET domain profile. 520 666 IPR001214 GO:0005515
Vivi1172g00011 697 SMART preset_2 411 504 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi1172g00011 697 ProSiteProfiles Pre-SET domain profile. 457 517 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi1172g00011 697 Pfam SET domain 531 666 IPR001214 GO:0005515
Vivi1172g00011 697 MobiDBLite consensus disorder prediction 156 177 - -
Vivi1172g00011 697 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 123 691 - -
Vivi1172g00011 697 SUPERFAMILY PUA domain-like 218 402 IPR015947 -
Vivi1172g00011 697 ProSiteProfiles YDG domain profile. 234 382 IPR003105 -
Vivi1172g00011 697 SMART G9a_1 229 386 IPR003105 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1172g00011 5 697 Su(var)3-9 homologs AT1G73100 49.571 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi1172g00011 SAD_SRA 1e-46 CL0178