Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1172g00002 ATGATGAAACGGATGAAAAAGGAGATTCCGGATGACATACTCCATGATGATCAGATTGGTTCGCAGTTGAATGATGAGGATAATGGTAGAAGTGCCTGTGGAGTTGTTCTGAAGAAAGGGCCGTGGACAAGTGTTGAAGATGATATATTGGTCAAGTATGTCAACAAGAACGGAGAAGGGAATTGGAATGCCGTTCAGAAGCAGACAGGCCTGTTGCGTTGTGGAAAAAGTTGTCGACTGCGATGGGCTAATCACCTAAGGCCACATTTAAAGAAAGGGGCATTTACTGAGGAAGAGGAGCGGTTGATTTGTGAGCTTCATTCAAAAATGGGAAACAGATGGGCACGCATGGCAGTGCATTTACCTGGTCGTACAGACAATGAGATAAAAAACTATTGGAACACTCGGATCAAGAGGCGTACCCGAGCTGGCTTGCCACTTTATCCTCCTGGTGTATATCAAGCGGCTCTTAATAACCAAAGCACCGGTAGAATTAACGGTGGTAATAAAGTGCATTCTGATTTCTTGCATAAAAGGAGTTTTAGTATGCATGATGCAATGTTTGACTGCCTGAAGGATACCCAGGGAATCTCACCTTATTCGCCTGATATTTCTGATTACGGCAATATGCAAAATGGTTTTGATTCTTCTCAGTACTGTAGTTTTGTGTCATCGACATCATCTAACCCTAAACGTTTTCGAGAGTCACCAATACCGTTTCTTGATTTTGGTTGTATTGACAGAAGCGATGTTTATCCATTTGAACATATTCAGGATGATGCTTTTGATAAGTTGACACAATCATTTGGAGTGCAATCACCTCTTGATCCTGGTTTCTTCTCAAACAGCTTAATGTGTTACAGCCATTCACTTAAAAATGGCAATTTCTCTACTTCTATGCCTTTTGAGGCTGTGAAGTCGGAGCTCCCTTCACTCCAATATCCGAAAATTGATTTAGGTAGCCGGAGTACATCTCCCTCACACCCACTACTTGACTCAATTGATGATTTTATCAAATCTCCTACACCAATTAGTACACTGGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGCAATCTGTACTTCATCAGCGGAAGACTCCGAGCAGTTCAAAAAACCAATATTATGACAGAAGTTCATATTCATCTGCTGCAACTCCCTGTGAAAGAGATGACCTGTCAGCATGGAGCATGTATGAGCAAGAATGGAAAGACTATGCTGACCCTGTATCTCCATCTGGTGTATCTTCAATATTGAATGATTGCCCTGCTGTTGTTGCCAACATAAATTCAATGGATGAACAGCCACCTGTTCAGACCGACAATGGCAACATTGTGAAATCAGAGTATGTTGATCATATGTGGTCCCCTGACAGTTCTTATATCAAGTCTCTGTTGAACAATAGTCGGCCAGATTTTGTGCTTGATTCAGGTTGGTATGAGCCGTGTTCTGGGCATGGCAATAACCAAGCCATTGCCACTGATGCTACATCGATGTTTCAGGAAGATCAATTAGCCACCGACTATAAACATATGACTGCTGCTGGAACTTCTAACCCAAGTCAGGTGTTAATATCTTTACGTGTGTTGATTTGGACCGAGAAATATTTTACGTGTGATTTTTTAGTACTGAACAATTGTTAA 1650 0.417 MMKRMKKEIPDDILHDDQIGSQLNDEDNGRSACGVVLKKGPWTSVEDDILVKYVNKNGEGNWNAVQKQTGLLRCGKSCRLRWANHLRPHLKKGAFTEEEERLICELHSKMGNRWARMAVHLPGRTDNEIKNYWNTRIKRRTRAGLPLYPPGVYQAALNNQSTGRINGGNKVHSDFLHKRSFSMHDAMFDCLKDTQGISPYSPDISDYGNMQNGFDSSQYCSFVSSTSSNPKRFRESPIPFLDFGCIDRSDVYPFEHIQDDAFDKLTQSFGVQSPLDPGFFSNSLMCYSHSLKNGNFSTSMPFEAVKSELPSLQYPKIDLGSRSTSPSHPLLDSIDDFIKSPTPISTLESDCSSPQNSGLLQSVLHQRKTPSSSKNQYYDRSSYSSAATPCERDDLSAWSMYEQEWKDYADPVSPSGVSSILNDCPAVVANINSMDEQPPVQTDNGNIVKSEYVDHMWSPDSSYIKSLLNNSRPDFVLDSGWYEPCSGHGNNQAIATDATSMFQEDQLATDYKHMTAAGTSNPSQVLISLRVLIWTEKYFTCDFLVLNNC 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1172g00002 549 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Vivi1172g00002 549 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 16 502 - -
Vivi1172g00002 549 Gene3D - 36 92 - -
Vivi1172g00002 549 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Vivi1172g00002 549 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Vivi1172g00002 549 Gene3D - 94 140 - -
Vivi1172g00002 549 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Vivi1172g00002 549 SMART sant 38 88 IPR001005 -
Vivi1172g00002 549 SMART sant 91 139 IPR001005 -
Vivi1172g00002 549 FunFam Transcription factor GAMYB 94 140 - -
Vivi1172g00002 549 Pfam Myb-like DNA-binding domain 92 135 IPR001005 -
Vivi1172g00002 549 Pfam Myb-like DNA-binding domain 39 86 IPR001005 -
Vivi1172g00002 549 FunFam MYB-related transcription factor 38 91 - -
Vivi1172g00002 549 CDD SANT 41 86 IPR001005 -
Vivi1172g00002 549 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Vivi1172g00002 549 MobiDBLite consensus disorder prediction 365 388 - -
Vivi1172g00002 549 CDD SANT 94 135 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1172g00002 36 525 MYB Transcription Factor Family AT3G11440 39.535 2.03e-97 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1172g00002 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1172g00002 K09422 - gmx:100810415 680.248