Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1171g00009 ATGGGTTTGAGAGACATAGGAGCTTCACTTCCTCCTGGTTTTCGTTTTTATCCAAGTGATCAAGAATTGGTTTGTCACTATCTTTACAAAAAGATCACAAATCAACAAATTCTTAGCCATTCTTTGCTTGATATTGATCTTCACATATGTGAACCATGGCAACTTCCTGAGGTGGCAAAGCTTAATGCAAATGAATGGTACTTTTTTAGCTTTCGAGACCGTAAATATGCTACTGGATTTAGAACAAACAGAGCAACTATATCTGGCTATTGGAAAGCAACTGGGAAAGATCGTGTTGTGTTGGATCCAATGAGTGAAGAGGTTGTAGGGATGAGGAAGACATTGGTTTTCTATAGGAATAGAGCTCCAAATGGAATCAAGACAGGATGGATTATGCATGAGTTTAGGTTGGAGACACCACACATGCCTCCTAAGGAGGACTGGGTATTGTGTAGAGTCTTTCACAAAAGCAAAGAAGACAACAATTCAAAACTGAACACACAAGAATTCATATATGAGACAACACCTCCATCCCTAACATTGATGTCATCATCTCCAACAAATTACCAAACCATCCCTACTGGCTATAACAGAATTGATTCTTTTTCTTCCTCCATGACAACACTTCATCATTTAAATCCAAACCAAAACAATAATTCTTCCATCATCAATAATCTCTTTCAATATTCTCCTCATACAAATAATAATAATAATCATAGTACCATTACTCAAATTAGTTCCAAATGTGATGATGAATATGGATTCTTGTGGAACATGGATTTGGAAGAAAATAGCTTAGAAGATGGTGTGGCTTCAAACATGGACGCAATAAGATTCGAGGTTGATAATAATAATACTACTACTAATAATAATATGGTTTTACTATAA 888 0.357 MGLRDIGASLPPGFRFYPSDQELVCHYLYKKITNQQILSHSLLDIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRVVLDPMSEEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNSKLNTQEFIYETTPPSLTLMSSSPTNYQTIPTGYNRIDSFSSSMTTLHHLNPNQNNNSSIINNLFQYSPHTNNNNNHSTITQISSKCDDEYGFLWNMDLEENSLEDGVASNMDAIRFEVDNNNTTTNNNMVLL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1171g00009 295 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vivi1171g00009 295 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vivi1171g00009 295 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Vivi1171g00009 295 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 234 - -
Vivi1171g00009 295 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1171g00009 6 256 NAC Transcription Factor Family AT1G56010 42.751 1.50e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1171g00009 NAM 1.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1171g00009 - - tpra:123889826 453.366