Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1171g00005 ATGGATTCGGCGAGGAGTTGGTTATCCAAGTTTCAACCGCGAGATAGACTGAGAGCTTCCACCAGGAAGAAGGACGACGTTATGGGCGGAACCGAGGATTCCGATGCGTCTGTTGATGACGAGAGTCTTTCCAGTGTTACAAAGCAGAAGGTAGCGGCCGCGAAACAGTATATTGAGAACCATTACAAGGAACAGATGAAGAGTCTTCAAGAGAGAAAGGAGCGGCGAACTATCTTGGAAAAGAAGTTGGCGGATGCTGATGTCTCCGAGGAAGATCAAAATAACTTACTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGTCTTCAGAGGCATAAAATGGGTGTGGAGGATTTTGAGATGTTGACTATGATTGGAAAAGGCGCATTTGGGGAGGTGAGAGTCTGTAGGGAAAAGACCACGGATCATGTATTTGCGATGAAAAAGCTAAAGAAATCAGAAATGCTTCGAAGAGGCCAGGTTGAACACGTCAGAGCTGAGAGGAATCTTCTTGCAGAGGTTGACAGTAATTGTATAGTCAAGCTTTATTGTTCTTTCCAGGATGATGATTATTTATATCTTATAATGGAGTATCTACCGGGAGGGGATATGATGACTCTACTTATGAGAAAGGATACGTTGACCGAAGACGAAGCCCGATTTTATGTAGGAGAAACAGTTTTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAACTTATTACTTGATAAATACGGACACTTGAAACTATCAGATTTTGGATTATGTAAACCGTTAGACTGTAGTACACTTGAAGAATCAGACTTTTCTCAGAATGCAAATGGAACTGGACAGGGTGATGACCGTGCAGGTCCGAAGCGTACGCAACAAGAACAGTTGGAAAACTGGCAGAAAAACAGGAGGACACTTGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTGGTGGGATATCCACCTTTTTATTCCGATGATCCAATGTCAACATGCAGGAAGATAGTAAACTGGAAGTCTCACTTGAAATTTCCTGAAGAAGCAAGGCTATCTCCGGAGGCCATAGATCTTATAAGTAAGCTTTTGTGTAATGTGAACCAGAGACTGGGGTCAAATGGTGCAGTTGAAATAAAGTCTCATCCATTCTTTGAAGGTGTTCAATGGGAAAAATTGTATCAAATGGAAGCTGCATTTACTCCTGAAGTCAATGATGAGTTAGATACTCAAAATTTTGAAAAGTTTGAAGAGGCTGACAGCCAGACTCATTCATCATCAAGAGCTGGTCCATGGAGGAAGGTAATCATAGGTTTTTGTTTCTGTGTAAATTGTCATACAATTTGTTTCTTCGTAATTATTTCATTGCATGATTCATTGCTCATTGGGATGTTGCAGATGCTTTCATCTAAGGACTTTAATTTTGTGGGATACACATACAAGAACTTTGAAATTGTAAACGACTATCAAGTTCCTGGGATGGCTGAACTGAAGAAAACCTCCAAACCAAGGAGGCCGTCTGTCAAATCGCTGTTTGACGGGGACTCGGAGACTTCTGAGGCGTCTGATATGTCAGATGTGTCTGCAAACAATCAACCTGCTCAATGA 1701 0.4068 MDSARSWLSKFQPRDRLRASTRKKDDVMGGTEDSDASVDDESLSSVTKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVEDFEMLTMIGKGAFGEVRVCREKTTDHVFAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDDYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLKLSDFGLCKPLDCSTLEESDFSQNANGTGQGDDRAGPKRTQQEQLENWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAIDLISKLLCNVNQRLGSNGAVEIKSHPFFEGVQWEKLYQMEAAFTPEVNDELDTQNFEKFEEADSQTHSSSRAGPWRKVIIGFCFCVNCHTICFFVIISLHDSLLIGMLQMLSSKDFNFVGYTYKNFEIVNDYQVPGMAELKKTSKPRRPSVKSLFDGDSETSEASDMSDVSANNQPAQ 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1171g00005 566 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Vivi1171g00005 566 Gene3D Transferase(Phosphotransferase) domain 1 204 434 - -
Vivi1171g00005 566 Pfam Protein kinase domain 121 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1171g00005 566 MobiDBLite consensus disorder prediction 277 301 - -
Vivi1171g00005 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vivi1171g00005 566 SMART serkin_6 120 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1171g00005 566 Pfam Protein kinase C terminal domain 435 511 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vivi1171g00005 566 FunFam Non-specific serine/threonine protein kinase 315 434 - -
Vivi1171g00005 566 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Vivi1171g00005 566 CDD STKc_NDR_like 118 512 - -
Vivi1171g00005 566 Gene3D Phosphorylase Kinase; domain 1 118 445 - -
Vivi1171g00005 566 CDD MobB_NDR_LATS-like 54 115 - -
Vivi1171g00005 566 MobiDBLite consensus disorder prediction 528 566 - -
Vivi1171g00005 566 ProSiteProfiles Protein kinase domain profile. 120 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1171g00005 566 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 464 - -
Vivi1171g00005 566 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Vivi1171g00005 566 MobiDBLite consensus disorder prediction 9 31 - -
Vivi1171g00005 566 SUPERFAMILY Protein kinase-like (PK-like) 93 462 IPR011009 -
Vivi1171g00005 566 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 521 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi1171g00005 566 MobiDBLite consensus disorder prediction 543 566 - -
Vivi1171g00005 566 MobiDBLite consensus disorder prediction 1 45 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1171g00005 1 543 AGC Kinase Gene Family AT2G20470 73.370 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vivi1171g00005 Pkinase 3.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1171g00005 K08790 - gmx:100805940 937.562