Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1170g00021 ATGTCCAACGACTCTTTGTTCGCCGGCATTCGTTTTGATAGAAAGAGATTCGGCGCCGATATTGCCAGGTTTCAGAAAAAAGATGCCGGTACCAGTTTGGCAAAGATTCAGAGTGTGACAGAAGATGAAGAAACCAAGGAAACAATAGAAGCCGTGTCTGCGAAGAAAAGGAAGCGCAAGAAAACCTCTTCTGAAGCTGTTGATGGATTCAGTGTGTTCCGAAGTTCAACATCGAAGTCAAATGATAAAGTCCAAGCCGATGATGATGAATCCATTCGGTTGAAGAAAGAAAAAAATAAACAACTCGAGCGTGATGCTATCTTCAGGAAGAGCCATAACATTCATGTCTCCGGTTACAATGTGCCGTCCCCACTTCAAAGCTTTGATGAGTTGAAAACAAGTTATAAATGTCCGTCCTATTTATTGCGGAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAACAGCAGGCTATTCCAGTACTCTTACAGGATCGTGAATGCTTTGCCTGTGCCCCAACTGGCTCTGGAAAAACCCTTGCATTTGTGTTTCCCATGCTCATGAAGCTCAAGGCTCATTCAAAAGATGGCGTTCGAGCTGTTATCATCTGTCATAGCCGTGAATTATCTGGTCAAACATACCGAGAATGCAAAAAGTTTGCCAAAGGGGAAAAGTTTCGTATCAAGTTAATGACAAAACATCTTTTAGAAGGTTCTGATTTTTCAAAATTTCCTTGTGACATACTTATATCCACGCCCTTTCGATTACGCTTGGCTACCCAGAGGAAAAAGCTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAGTCTGATAAGCTATTTGAGCCTGGAATGTTCAAGCAGATTGATGCTATTATCAAAGCATGCACAAATCCCTCAATAGTACGCTCTCTGTTCAGTGCTACTTTACCTGATTTTATTGAAGATAAAGCTCGAGAACTTATGCATGATGCTGTTCGGGTAATCGTTGGCAGGAAGAATATGGCTTCTGAAACAATTAAGCAGAAGTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTATAGCAATTCGGCAGAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGCATGGTGAACTTGCATTCGAAGATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTTGTAAAACATGGGTTTTGATTGCCACTGATGTGGTTGCTCGAGGAATGGATTTCAAAGGCATTAACTGTGTGATCAATTATGATTTCCCAGATTCTGCATCTGCATATATCCACAGAATTGGTCGTACTGGTAGAGCAGGCAGGAGTGGCGAAGCGATTACATTTTACACAGAAGAGGATATTCCATTCTTGAAGAACGTTGCTAATCTAATGTCATCCTCAGGCTGTGAAGTTCCATCCTGGTTGACGGAGTTGCAGAAAAAGAAGTGGAGGAAGCACCGACCCAAAAGAGATTCTATCTCAACTAAACCTGACAAAGTTGCAAAAAAACAAAAAAAAGAAGTGGAGGAAGCACAGGCCCAAAAAGATTCTATCTCAACTAAACCGGATCTTTAA 1647 0.4165 MSNDSLFAGIRFDRKRFGADIARFQKKDAGTSLAKIQSVTEDEETKETIEAVSAKKRKRKKTSSEAVDGFSVFRSSTSKSNDKVQADDDESIRLKKEKNKQLERDAIFRKSHNIHVSGYNVPSPLQSFDELKTSYKCPSYLLRNLAELGFREPTPIQQQAIPVLLQDRECFACAPTGSGKTLAFVFPMLMKLKAHSKDGVRAVIICHSRELSGQTYRECKKFAKGEKFRIKLMTKHLLEGSDFSKFPCDILISTPFRLRLATQRKKLDLSRVEYLVLDESDKLFEPGMFKQIDAIIKACTNPSIVRSLFSATLPDFIEDKARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLIAIRQSFAESLNPPVLVFVQSKERAKELHGELAFEDIRVDVIHSDLSQEERENAVDNFRACKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRTGRAGRSGEAITFYTEEDIPFLKNVANLMSSSGCEVPSWLTELQKKKWRKHRPKRDSISTKPDKVAKKQKKEVEEAQAQKDSISTKPDL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1170g00021 548 Pfam DEAD/DEAH box helicase 154 316 IPR011545 GO:0003676|GO:0005524
Vivi1170g00021 548 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Vivi1170g00021 548 MobiDBLite consensus disorder prediction 515 548 - -
Vivi1170g00021 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 476 IPR027417 -
Vivi1170g00021 548 Gene3D - 339 546 IPR027417 -
Vivi1170g00021 548 SMART helicmild6 383 464 IPR001650 -
Vivi1170g00021 548 Coils Coil 525 545 - -
Vivi1170g00021 548 MobiDBLite consensus disorder prediction 505 548 - -
Vivi1170g00021 548 Gene3D - 105 338 IPR027417 -
Vivi1170g00021 548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 503 IPR001650 -
Vivi1170g00021 548 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 42 535 - -
Vivi1170g00021 548 MobiDBLite consensus disorder prediction 44 66 - -
Vivi1170g00021 548 CDD DEADc_DDX52 141 334 IPR044764 GO:0003724|GO:0005524|GO:0030490
Vivi1170g00021 548 CDD SF2_C_DEAD 343 473 - -
Vivi1170g00021 548 SMART ultradead3 149 346 IPR014001 -
Vivi1170g00021 548 Pfam Helicase conserved C-terminal domain 366 464 IPR001650 -
Vivi1170g00021 548 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 331 IPR014001 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1170g00021 124 502 Eukaryotic Initiation Factors Gene Family AT3G19760 30.709 6.66e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1170g00021 K14779 - gmx:100800969 840.876