Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1170g00005 ATGAGTTTCACCGGAAACGGAATGCACAGAACCGCAGAAGAGACGGAGCAGAGGATCCGGCATGGATCCGAATCATTTCCCATGCAATCATTCGAGTTAATGGACTTTTACTTTCCTCAACAGCTCTTCACCGTCGAAAAAACCTGGTTCAGTCTCACATCTTCTCTTTTCTCTTTCTTTTCTTCTCCGCAAGGCCAAAACATCGCTTCTCAGGTGAAAAATGAGTATGGAAACTATGTACTGCCACTTGATTTTCAGCAGCTCAAAATAATGTGTGATGTTACAAAATTTTATGAAATGTTAACGGAGAAACCTAAAATTGCTCTCTTATGCATGAGTGCTGCTGTTCACAAGGTTTTGCTTTCTAAATGGGAGAGTGACAAGATGGAGCTTTCTGCCAAAGTAGACATCCGTCTTCATAACTGTCCTGAAACCATGATTGCGTTGAAGAACTTAAAAGCAGCTTACATTGGCAAGCTCGTCTCAGTGCGTGGTACCGCTGTGAAAGCCAGCACCGTCAGGCCTCTTGTGGTAGAGATGAGTTTTGAATGCAGTAAGTGCAAACAAAGTATTACACGTATATTTCCCGATGGAAAATTCTCACCACCGTCAACTTGCAATTTGAATGGATGCAAAAGCAAATTCTTCAATCCATTGCGATCTACTGCTAAGACTATTGATTTTCAGAAAATAAGGGTTCAAGAATTATTAAAACATGAAGATCATGAGGAAGGACGAGTCCCTCGAACAGTGGAATGTGAACTTACCCAAGATCTTGTTGATTCATGCATTCCTGGAGATGTGGTGACGGTTACTGGAATTATCAAAGGAATTAACAATTACATGGATATTGGAGGAGGGAAGTCAAAGAACAAAAACCAAGGATTTTACTATTTGTATCTTGAAGCTGTATCCATTATGAATTCAAAGTCACAGTCCATACCTGATGATTCGCAAGACTCTAATGCCAAAGCTAGACCAACTGAGCTGTTTGATTTGTTTTCATTTTCATCAAAGGATTTAGAATTTGTTGTGAAATTTGCAGAGGAGCATGGTTCAGATTTATTTCGGCAAATTCTTCACTCTATATGCCCTTCCATCTATGGGCACGAGCTTGTTAAAGCTGGGATAACTCTAGCATTATTTGGTGGTGTACGAAGGCATTCTATGGATCAGAATAAGGTACCTGTGAGGGGAGATATTCATGTCATGATTGTAGGCGACCCTGGTCTAGGTAAGAGCCAGTTGTTACAAGCAGCAGCAGCTGTTTCTCCACGAGGTATCTATGTATGTGGTAACGCAACAACCAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAATGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGACGAGTTTGATAAAATGTCTTCAGAGCATCAGGCTTTACTGGAGGCAATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGATTGGTAGCAAGTTTATCATCCCGGACTTCTGTCTTAGCAGCAGCAAACCCTGCTGGTGGTCATTATAACCGGGCAAAAACTGTAAATGAAAATTTAAAAATGAGTGCTGCACTATTGTCCCGTTTTGATTTAATTTTCATATTGCTGGACAAGCCTGATGAACTTTTGGACAAACGAGTCTCGGAGCATATTATGTCACTTCATACTGGGTTCGGCCAACACTCACAAGCATCTAAAAAGCGACGTGGAGATCCACCTTCTGATTCAAGAGCTTCTGCATCACAGAATGTTGAAGGGGTAAAATTGGGTGCTAGATCTGGTTCTTTAATTTCAAAGTTGAAACTTGACAGACGAGGAGACAATGATTTTGTTCCATTACCTGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGAAGTTTTGTCTTTCCTAGGATGTCCAAGCCAGCAGCAGAAATCATACAAAATTTTTACCTAAAACTTAGAGATCATAACGTTTCGGCTGATGGTACTCCTATAACAGCAAGGCAGTTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGTGCTCGGCTGGACTTGAGAGTAGAAATAACTACACAGGATGCAATGGATGCTGTTGAAATCATGAAGGAATCTCTGTATGATAAATATGTTGACGAACACGGTGTTGTGGATTTTGGTCGAAGTGGGGGGATGAGTCAACAGAAAGAAGCAAAACGCTTTCTAAATGCCCTTAATAAGCAATCGGAGCTGGAACAAAAAGATTCCTTTTCAGTATCTGAAATGTACAGTCTGGCAGATAGGATTTCCTTGAAAGTACCTGATGTGGATACTTTCATCGATAATTTAAACAGCGTTGGTTATCTACTTAAAAAAGGACCAAAGACATACCAGGTGTTATCCTCTTCTTACTCGCGGAGCCAATCGACTAGGTCAAGGGGCTAA 2439 0.4141 MSFTGNGMHRTAEETEQRIRHGSESFPMQSFELMDFYFPQQLFTVEKTWFSLTSSLFSFFSSPQGQNIASQVKNEYGNYVLPLDFQQLKIMCDVTKFYEMLTEKPKIALLCMSAAVHKVLLSKWESDKMELSAKVDIRLHNCPETMIALKNLKAAYIGKLVSVRGTAVKASTVRPLVVEMSFECSKCKQSITRIFPDGKFSPPSTCNLNGCKSKFFNPLRSTAKTIDFQKIRVQELLKHEDHEEGRVPRTVECELTQDLVDSCIPGDVVTVTGIIKGINNYMDIGGGKSKNKNQGFYYLYLEAVSIMNSKSQSIPDDSQDSNAKARPTELFDLFSFSSKDLEFVVKFAEEHGSDLFRQILHSICPSIYGHELVKAGITLALFGGVRRHSMDQNKVPVRGDIHVMIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTNDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRVSEHIMSLHTGFGQHSQASKKRRGDPPSDSRASASQNVEGVKLGARSGSLISKLKLDRRGDNDFVPLPGQLLRKYIAYARSFVFPRMSKPAAEIIQNFYLKLRDHNVSADGTPITARQLESLVRLAEARARLDLRVEITTQDAMDAVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDSFSVSEMYSLADRISLKVPDVDTFIDNLNSVGYLLKKGPKTYQVLSSSYSRSQSTRSRG 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1170g00005 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 717 IPR027417 -
Vivi1170g00005 812 Pfam MCM OB domain 149 276 IPR033762 -
Vivi1170g00005 812 SUPERFAMILY Nucleic acid-binding proteins 75 279 IPR012340 -
Vivi1170g00005 812 Gene3D - 176 226 - -
Vivi1170g00005 812 Coils Coil 470 490 - -
Vivi1170g00005 812 Gene3D - 149 278 IPR012340 -
Vivi1170g00005 812 PRINTS Mini-chromosome maintenance (MCM) protein family signature 536 544 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vivi1170g00005 812 PRINTS Mini-chromosome maintenance (MCM) protein family signature 458 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vivi1170g00005 812 PRINTS Mini-chromosome maintenance (MCM) protein family signature 398 413 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vivi1170g00005 812 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 498 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vivi1170g00005 812 PRINTS Mini-chromosome maintenance (MCM) protein family signature 509 521 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vivi1170g00005 812 MobiDBLite consensus disorder prediction 568 595 - -
Vivi1170g00005 812 Pfam MCM P-loop domain 353 566 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vivi1170g00005 812 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 73 749 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vivi1170g00005 812 MobiDBLite consensus disorder prediction 1 21 - -
Vivi1170g00005 812 Gene3D - 333 721 IPR027417 -
Vivi1170g00005 812 Pfam MCM AAA-lid domain 628 711 IPR041562 -
Vivi1170g00005 812 CDD MCM8 359 710 - -
Vivi1170g00005 812 CDD MCM8_WHD 733 798 - -
Vivi1170g00005 812 ProSiteProfiles MCM family domain profile. 355 562 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vivi1170g00005 812 SMART AAA_5 399 551 IPR003593 GO:0016887
Vivi1170g00005 812 SMART mcm 145 712 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vivi1170g00005 812 FunFam DNA helicase MCM8 isoform X1 176 227 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1170g00005 43 798 Core DNA Replication Machinery Family AT3G09660 72.391 0.0 1143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1170g00005 K10737 - gmx:100784549 1319.29