Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi116g00023 ATGGTGGCGGTTGATGAAAAGAAGAAGGGTCACATGGTTCCACAATACGATGATCAAGGTGTGACTTTGGCGTTTCATGGTAGAGAGGTCTATGAGGGTGTTCCTATTGCACATTTGTCTAAAAAGTCTCCTTTAAACGATAAACATAAGGTGGTTGAAAATAAACACAGACAAGCAACACCTGATGAGCCACAATCACACAAGTTTGCAAGCTCATCTAAAGAGACAACAGATGCAACATTTTCTCGTGGCGAGGCTGTGATTCAAGCCGAAGGACTCCGATCAAGTTTGGAACCGGAATTCCCAAGTTTTGTGAAGTCCTTGGTCAGATCACATGTAGCCAGTTGTTTTTGGATGGGACTACCCGTGGCATTCTGTAAAAGACATTTACCAGATAAGGATACAACTATCACATTGGAAGATGAATTTGGTAGAGAATACAAGACAAAATACATTGCATGTAAAACAGGATTGAGTGCTGGTTGGAGACAGTTTTCTGCTGTGCATAAATTGCTAGAGGGTGATGTGGTGGTATTTCAATTAGTTGAACCCGCCAAATTTAAGGTTTATATAATAAGAGCTATGAGAGAACCAGAGAATCAAGAAAGTTGCTCAAAACAAAAAGTTGGAGGAAAAAATTACACAGAAGCTGATGTTGTAGCATGTAATAGTCCAAAAAGAAAAACTGGTAAGCCTATCCCACAAGACATCCAAAAGAAAAAGAAAATTATTGTATCGAAAACGGAGACTAAGGCTAAACAGTATACAGAACATTATGAAAATGATAGTGAGGAAGCTTTGTCGGAAATATTGGAGGCATATAAAATGCCTGAATTCAAAGACTTAAATGGTTTCGAAAATTTCAGAATCATAGTCAACGGAATGCTAATTGACAATGAACTCTCTACGGAAGTTCGAAACAAGTACTACAAACTCTGTTACAGTCAACAAGCTTTTCTTCATGACAATCTCATCAAAGGCTTGAACTATAATTTGATTTCTGGAGTTATATATGAAATTGTTAACATAGCTGATGCAATAAAAGTCAGTGTGATATCTACGCCGCGTTTGGAGTTTTCTAATTGGGATAAAACGTTGCAGGCATTTGAAAATTTGGGCATGAATGTTGAATTTTTGAGACATCGATTGCGCAGGCTTGTTAGCCTTGCTTATGAAACGGACAATGGCTTAGAGACTAGAAGATACTTGGCGTATAGAACCGAGGAACACGGTGGAGTAGATGATGGAATAAAGAACATGGAAACAAAACTTGAGGAATTGAAAGAAGCTTGTAATGGATTTGGTGATTATCTTGAGAGTTTGAAGCACAAAGCTGAAAGGTATGAACATAAGTTTCAAAAAGAAGTTGCTGCTAATTGGTGA 1383 0.3796 MVAVDEKKKGHMVPQYDDQGVTLAFHGREVYEGVPIAHLSKKSPLNDKHKVVENKHRQATPDEPQSHKFASSSKETTDATFSRGEAVIQAEGLRSSLEPEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDTTITLEDEFGREYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVFQLVEPAKFKVYIIRAMREPENQESCSKQKVGGKNYTEADVVACNSPKRKTGKPIPQDIQKKKKIIVSKTETKAKQYTEHYENDSEEALSEILEAYKMPEFKDLNGFENFRIIVNGMLIDNELSTEVRNKYYKLCYSQQAFLHDNLIKGLNYNLISGVIYEIVNIADAIKVSVISTPRLEFSNWDKTLQAFENLGMNVEFLRHRLRRLVSLAYETDNGLETRRYLAYRTEEHGGVDDGIKNMETKLEELKEACNGFGDYLESLKHKAERYEHKFQKEVAANW 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi116g00023 460 ProSiteProfiles B3 DNA-binding domain profile. 104 195 IPR003340 GO:0003677
Vivi116g00023 460 Gene3D - 85 196 IPR015300 -
Vivi116g00023 460 SUPERFAMILY DNA-binding pseudobarrel domain 97 193 IPR015300 -
Vivi116g00023 460 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 36 197 IPR044837 -
Vivi116g00023 460 MobiDBLite consensus disorder prediction 54 81 - -
Vivi116g00023 460 MobiDBLite consensus disorder prediction 64 81 - -
Vivi116g00023 460 Coils Coil 438 458 - -
Vivi116g00023 460 CDD B3_DNA 102 193 IPR003340 GO:0003677
Vivi116g00023 460 SMART B3_2 104 195 IPR003340 GO:0003677
Vivi116g00023 460 Pfam B3 DNA binding domain 104 194 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi116g00023 82 200 B3 DNA Binding Superfamily AT3G19184 48.739 4.39e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi116g00023 B3 3.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi116g00023 - - mtr:120577567 583.948